Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g2047 ATGCCATCCCTCAATGTCCTTCTTCCATTGTCGTCGTTTCGAAACCCTAACTTGGACCATACCCGCATCTTCAAACCCATTAGACTCTTCAATTTCCACCCAACTTCCAAAACCCTATCTAACAGTTTTTGCTACAGAATCCAAAACTCTAGAATCCGCTACCGGAGGATTAATTGCAATGCTTTGAAGGATTCCAGTGAAGAAACTAAGGTGGTATTGGACTCCGGTGGCGGCGATGATGGTGGAGGGAGTGGTGGTAACGGCGGTGACGGTGGCGGTGATAGGGAGGTGGAGAAAAAAGATGGGTCTTCGGGGCCTTTGCCAGATTGGTTGAATTTTACTTCTGATGACGCAAAGACGGTCTTTGCGGCACTGGCAATCTCGCTTGCGTTTCGGTCGTTTGTGGCCGAGCCGAGGTACATTCCTTCGTTGTCAATGTATCCTACATTTGATGTTGGCGATCGAATTGTTGCAGAAAAGGTTTCATACTATTTTAGAAAGCCATGTGCAAATGACATAGTAATATTTAAAAGCCCACCAGTCCTTCAGGAAGTTGGGTATACAGATGATGATGTTTTCATAAAACGAGTGGTTGCAAAGGAAGGTGATATTGTTGAGGTTCGTAAAGGGCATCTTATAGTTAATGGGGTTGAAAGGAATGAAAACTTCATCCTTGAAACACCTTCTTATGACATGACACCTGTACGTGTACCAGAGAACTATGTTTTTGTGATGGGGGACAACCGCAATAACAGTTATGATTCGCATGTGTGGGGTCCCCTGCCAGCCAAGAATATCATAGGGAGATCAGTTTTTCGATATTGGCCACCAAATAGGATTGGCAGCACAGTTTCTGAAGAGAGCTGTTCCGTTGAAAGCGAGCAGGGGACTAGTCTAGCTTCGCAATAA 909 0.451 MPSLNVLLPLSSFRNPNLDHTRIFKPIRLFNFHPTSKTLSNSFCYRIQNSRIRYRRINCNALKDSSEETKVVLDSGGGDDGGGSGGNGGDGGGDREVEKKDGSSGPLPDWLNFTSDDAKTVFAALAISLAFRSFVAEPRYIPSLSMYPTFDVGDRIVAEKVSYYFRKPCANDIVIFKSPPVLQEVGYTDDDVFIKRVVAKEGDIVEVRKGHLIVNGVERNENFILETPSYDMTPVRVPENYVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVFRYWPPNRIGSTVSEESCSVESEQGTSLASQ 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g2047 302 ProSitePatterns Signal peptidases I signature 3. 242 255 IPR019758 GO:0004252|GO:0016020
Dere06g2047 302 NCBIfam signal peptidase I 119 277 IPR000223 GO:0006508|GO:0008236|GO:0016020
Dere06g2047 302 FunFam Peptidase/ serine-type peptidase 143 274 - -
Dere06g2047 302 Gene3D Umud Fragment, subunit A 131 288 - -
Dere06g2047 302 PRINTS Bacterial leader peptidase 1 (S26A) family signature 237 256 IPR000223 GO:0006508|GO:0008236|GO:0016020
Dere06g2047 302 PRINTS Bacterial leader peptidase 1 (S26A) family signature 134 150 IPR000223 GO:0006508|GO:0008236|GO:0016020
Dere06g2047 302 PRINTS Bacterial leader peptidase 1 (S26A) family signature 193 205 IPR000223 GO:0006508|GO:0008236|GO:0016020
Dere06g2047 302 MobiDBLite consensus disorder prediction 70 108 - -
Dere06g2047 302 Pfam Signal peptidase, peptidase S26 118 275 IPR019533 GO:0004252|GO:0006465
Dere06g2047 302 SUPERFAMILY LexA/Signal peptidase 132 283 IPR036286 -
Dere06g2047 302 ProSitePatterns Signal peptidases I serine active site. 143 150 IPR019756 GO:0004252|GO:0016020
Dere06g2047 302 PANTHER SIGNAL PEPTIDASE I 106 281 IPR000223 GO:0006508|GO:0008236|GO:0016020
Dere06g2047 302 CDD S26_SPase_I 137 269 IPR019533 GO:0004252|GO:0006465
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g2047 Dere-ChrDere06 36011955 36014403 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g2047 146 276 MADS-box Gene Family AT1G29960 31.579 3.63e-12 60.8