Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g2045 ATGTCAACGACGCCGTCTCCTGGAGCTGCTCCGGCACCCACATCGCCGCCGGCGCCCAACACCACTTCTCCTCCCTCGAGCCCTTCTGCTCCACCACCGTCCACACCGGCCTCACCACCGCCAGCCACCCCCTCTGCCCCGCCACCGGCGACTCCTTCGACTACTCCTCCGGCCCCAACTACACCTACTCCGAGTCCTCCTTCTTCTTCACCTCCATCTTCCACGCCATCATCTTCTCCGCCACCGGCATCGTCGGCGTCTCCTCCTCCGCCGTCTAGCACCAGCACTCCGGCGAGTCGCAGTTCGCCACCTCCACCGTCGAGCTCAAGCTCGCCTTCGACTCCGAATCGAAGCCCGCCGCCACCGTCGTCCAAATCGCCGCCGTCGTCGTCGTCTTCGTCCTCATCGAGTAGTATATCAACTGGTGTTGTTGTCGGAATCGCCGTTGGGGCTGTGGCGATTCTTCTAGTGTTGAGTATTCTGTGCATTTGTTGTAGGAGGAAGAAGAGAAGACGGGATGAGGAATACTATGTGCCTCCGCCACCGCCGCCTCAGGGACCCAAAGTTGACCCATATGGTGGTCCAACGCATCACTGGCAGCACAACGCTCCCCCTCCTTCAGATCATGTGGTCTCAGTGATGCCAAAGCCATCACCGATGCCACCAGTTGCATCGAGGCCTCCCAAATCTCCAGTTTATGTTCCTCAACCTCCACCACCGCCACCACCTTTCATAAGCAGCAGTGGTGGGTCTGGCTCCAACTATTCAGGTGGTGAAAACCCTCTTCCGCCTCCTTCTCCAGGCTTTGCATTGGGTTTCTCGAGGAGCACCTTTACATATGAGGAGTTGGCACGGGCAACAGATGGCTTCTCTGACGCCAACCTCCTTGGACAAGGTGGATTTGGGTATGTGCACAGAGGCATTCTTCCAAATGGGAAGGAGGTGGCCGTTAAGCAGCTAAAGGCTGGAAGCGGGCAGGGGGAGCGTGAGTTTCAAGCTGAAGTTGAGATCATTAGCCGGGTTCACCACAAACATCTAGTTTCTTTGGTTGGATACTGCATCACTGGGACACAGAGGTTGCTTGTTTATGAATTTGTTCCCAACAATACATTGGAGTTCCACTTACATGGAAAAGGGCGACCTACCATGGACTGGCCTACAAGACTGAAAATTGCTTTAGGATCTGCAAAAGGACTGGCGTATCTTCACGAGGATTGTCATCCTAAGATCATCCATCGTGATATCAAAGCTGCTAACATACTTCTGGATTTTAAGTTTGAAGCAAAGGTTGCAGATTTTGGACTTGCAAAGTTTACTTCTGATGTCAATACTCATGTTTCCACGCGAGTGATGGGAACGTTTGGTTATCTGGCTCCAGAATATGCTTCTAGTGGGAAACTCACAGACAAATCAGATGTTTTCTCCTTTGGGGTCATGCTCCTGGAATTAATTACTGGACGCCGACCTGTTGATTCAAATCATACTTTCATGGAGGATAGTTTGGTAGACTGGGCAAGGCCTTTGCTCACACGCGCTTTGGAAGAGGAAAATTTGGATTCTGTGGTTGATCCAAGACTCCAACATGATTATGATCCCAATGAGATGGCTCGTATGGTGGCATGTGCTGCAGCTTGCATACGACACTCAGCACGACGTAGGCCAAGGATGAGCCAGGTTGTCCGTGCTTTGGAGGGAGATGTGTCTCTAGCAGATCTTAATGAGGGAATCAGGCCTGGACACAGCACTGTCTACAGCTCTCATGGAAGCTCAGATTATGATACTGCTCAATACAAGGAGGACATGAAGAAGTTCAGGAAAATGGCATTCGGAGGAGGAACACAGGAGTATGGTGCCAGCAGTGAATACAGTGGACCGCCGACGAGCGAGTACGGATTGTACCCTTCTGGCTCCAGCAGTGAAGGCCAGAGCCGCCAGACCACAAGGGAAATGGAAATGCGAAAGATGAAGAACGGCCAAGGTTTCAGTGGAAGTTCTTAA 1998 0.5245 MSTTPSPGAAPAPTSPPAPNTTSPPSSPSAPPPSTPASPPPATPSAPPPATPSTTPPAPTTPTPSPPSSSPPSSTPSSSPPPASSASPPPPSSTSTPASRSSPPPPSSSSSPSTPNRSPPPPSSKSPPSSSSSSSSSSISTGVVVGIAVGAVAILLVLSILCICCRRKKRRRDEEYYVPPPPPPQGPKVDPYGGPTHHWQHNAPPPSDHVVSVMPKPSPMPPVASRPPKSPVYVPQPPPPPPPFISSSGGSGSNYSGGENPLPPPSPGFALGFSRSTFTYEELARATDGFSDANLLGQGGFGYVHRGILPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHKHLVSLVGYCITGTQRLLVYEFVPNNTLEFHLHGKGRPTMDWPTRLKIALGSAKGLAYLHEDCHPKIIHRDIKAANILLDFKFEAKVADFGLAKFTSDVNTHVSTRVMGTFGYLAPEYASSGKLTDKSDVFSFGVMLLELITGRRPVDSNHTFMEDSLVDWARPLLTRALEEENLDSVVDPRLQHDYDPNEMARMVACAAACIRHSARRRPRMSQVVRALEGDVSLADLNEGIRPGHSTVYSSHGSSDYDTAQYKEDMKKFRKMAFGGGTQEYGASSEYSGPPTSEYGLYPSGSSSEGQSRQTTREMEMRKMKNGQGFSGSS 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g2045 665 MobiDBLite consensus disorder prediction 210 246 - -
Dere06g2045 665 FunFam Proline-rich receptor-like protein kinase PERK1 366 574 - -
Dere06g2045 665 MobiDBLite consensus disorder prediction 616 645 - -
Dere06g2045 665 ProSitePatterns Serine/Threonine protein kinases active-site signature. 410 422 IPR008271 GO:0004672|GO:0006468
Dere06g2045 665 MobiDBLite consensus disorder prediction 616 665 - -
Dere06g2045 665 MobiDBLite consensus disorder prediction 171 268 - -
Dere06g2045 665 CDD STKc_IRAK 296 565 - -
Dere06g2045 665 Pfam Protein tyrosine and serine/threonine kinase 295 563 IPR001245 GO:0004672|GO:0006468
Dere06g2045 665 SUPERFAMILY Protein kinase-like (PK-like) 265 563 IPR011009 -
Dere06g2045 665 ProSiteProfiles Protein kinase domain profile. 290 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere06g2045 665 Gene3D Phosphorylase Kinase; domain 1 270 365 - -
Dere06g2045 665 MobiDBLite consensus disorder prediction 1 139 - -
Dere06g2045 665 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 150 628 IPR047117 -
Dere06g2045 665 FunFam proline-rich receptor-like protein kinase PERK1 268 365 - -
Dere06g2045 665 ProSitePatterns Protein kinases ATP-binding region signature. 296 318 IPR017441 GO:0005524
Dere06g2045 665 PRINTS Proline rich extensin signature 4 16 - -
Dere06g2045 665 PRINTS Proline rich extensin signature 20 41 - -
Dere06g2045 665 PRINTS Proline rich extensin signature 41 57 - -
Dere06g2045 665 PRINTS Proline rich extensin signature 59 76 - -
Dere06g2045 665 SMART serkin_6 290 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere06g2045 665 Gene3D Transferase(Phosphotransferase) domain 1 366 573 - -
Dere06g2045 665 MobiDBLite consensus disorder prediction 9 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g2045 Dere-ChrDere06 36003493 36007104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g2045 84 648 Trihelix Transcription Factor Family AT1G70460 47.788 7.50e-169 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Dere06g2045 PK_Tyr_Ser-Thr 5.1e-47 CL0016