Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g2036 ATGCGAATGCCCTTCGCCTCGCGGGCTCCTTCACAGAACTTCAGACTCAACTTCTGGTTCCACATCATTAATGGTATGGAGCAGAACGACGTAATCGCACCGTTCGTTATGAAGACTTTTCATATGGTCAATGATCCCAACACGGATGCTCTCATCACTTGGGGGCGAGGCAACAATAGCTTCATCGTTGTAGACCCTTATGATTTCTCTCAGAGGATCCTACCCGTGTATTTCAAGCATAACAACTTCTCCAGCTTCGTTCGTCAGCTAAACACCTATGGGTTTAGAAAGGTGGATCCAGATCGATGGGAGTTCGCAAACGAGTGGTTCCTACGGGGGCAGAAGCACTTGTTGAGGAATATTGTGAGAAGGAAGCAAAGTAGGGTTGATTCTTCGTTGTTTCAGGTGAAGCATGAGGATTTGGATGACGAAGCGTTGATGATAGAGATAAAGAGGATGAGGGAAGAGCAGAAGTCGTTGGAGGAAGAGCTTCAGGGAATGAATAAGAGATTGGAGACTACAGAGAAACGACCCCAGCAAATGATGGCGTTTCTGTGCAAAGTGGTGGAGGACCCAGACGTTCTTTCTCGTATTTTGTTCGAGAGAGAGCAGAAACAAGTGGGAGAAAAAAAGCGTCGGTTGATATCATCAGCGGCGGCGGCGACACCCTCGTCGTCGTCTTCATCTGGTATGGCGGTGAAGACTGAGTTTGAGGAAGAGGAAGCTATTGCGGGTGCTAGAATATCATCTTCGTCGCCGGAAACGACTACCGGTTTTGAGACTGATCGTTTCTGTCAGGCGTCGCCGTCGCAAACGCAGGAAACAACGATCGCCGACGTGAATACGTCGTTGGGTTGGTGGAGCCAGAGAAATGCCATAATGGGTAAGCCTCGGATGGCTCAACAAGCTTATAATTGCAACAATGTTTTCAGCCCGTTGACGGCGGTAGTGGAGGCGAGAATGGATAACGAGGCGGCGATGTCGGCGCGTGGGGGATGGAGCGATCCGGTGAGTGAAAACAGTAATAAGGAGGAAATGAGCTATGTTACAGAAATGGCGGCGGAGAACAGTCCTCGGCCGGCTTATCCGTTTTCGCTGTTGGAAGGTGGCTTCTAG 1116 0.4973 MRMPFASRAPSQNFRLNFWFHIINGMEQNDVIAPFVMKTFHMVNDPNTDALITWGRGNNSFIVVDPYDFSQRILPVYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEWFLRGQKHLLRNIVRRKQSRVDSSLFQVKHEDLDDEALMIEIKRMREEQKSLEEELQGMNKRLETTEKRPQQMMAFLCKVVEDPDVLSRILFEREQKQVGEKKRRLISSAAAATPSSSSSSGMAVKTEFEEEEAIAGARISSSSPETTTGFETDRFCQASPSQTQETTIADVNTSLGWWSQRNAIMGKPRMAQQAYNCNNVFSPLTAVVEARMDNEAAMSARGGWSDPVSENSNKEEMSYVTEMAAENSPRPAYPFSLLEGGF 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g2036 371 Gene3D - 27 125 IPR036388 -
Dere06g2036 371 PRINTS Heat shock factor (HSF) domain signature 86 98 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere06g2036 371 PRINTS Heat shock factor (HSF) domain signature 35 58 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere06g2036 371 PRINTS Heat shock factor (HSF) domain signature 73 85 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere06g2036 371 SMART hsfneu3 31 124 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere06g2036 371 Pfam HSF-type DNA-binding 35 124 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere06g2036 371 Coils Coil 143 177 - -
Dere06g2036 371 ProSitePatterns HSF-type DNA-binding domain signature. 74 98 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere06g2036 371 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 32 246 IPR027725 -
Dere06g2036 371 FunFam Heat stress transcription factor B-4 27 125 - -
Dere06g2036 371 SUPERFAMILY "Winged helix" DNA-binding domain 32 124 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g2036 Dere-ChrDere06 35725874 35727212 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g2036 31 222 HSF AT3G24520 64.796 4.61e-87 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Dere06g2036 HSF_DNA-bind 1.8e-30 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere06g2036 06 35725874 35727212 Dere06g2036 06 35725874 35727212 ECH