Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g2013 ATGAAGAAGAAGGTCTATTTCCCTCTTCTCATTGCCTTCTTCCTAGGCACACTCTCTCTCTCTGCCTCCACCAATGCCCCTATAACTAGCCATGGAGCTCTCACTGACGCTGAAGCCTTGTACATCAGGCAGCGTCAGCTTCTTTACTACAGAGATGAGTTCGGCGACAGAGGAGAAAAAGTCACCGTCGACCCATCTCTGGTTTTCGAGAACAATCGCATTAGAAATGCTTATATAGCTTTGCAAGCATGGAAGCAAGCCATTCTTTCGGATCCGCTAAATCTCACTGCCAATTGGGTTGGAGCCAGTGTCTGTAACTATACTGGGGTTTACTGTACTATGGCGCTCGACAACCCCAAGGTTCGTACCGTCGCCGGCATTGATCTCAACCATGGTGACATTGCTGGGTATTTGCCGGAAGAGCTTGGACTACTCGTGGATCTTGCTCTCTTTCATATCAACTCCAACAGATTCTGTGGTACAGTTCCTCACAAGTTTGATAAACTGAAACTGCTTTTTGAACTGGATCTCAGTAACAATAGGTTCGCCGGGAAGTTCCCTGAGGTGGTTCTGAGGCTTCCTACTCTCAAGTTCTTGGATCTGAGATTCAATGAATTTGAAGGGACAGTGCCTAAAGAGCTTTTCGACAAGGATCTGGACGCGATCTTTATAAACCACAATCGTTTTGTGTTTGATCTTCCCGACAATTTCGGGAACTCTCCGGTGTCGGTCATCGTTCTCGCAAACAACAGGTTCCATGGCTGCATACCGGCGAGCTTGGGCAACATGTCTAACCTGAACGAGATCATTCTGATGAACAATGCCTTCCGCTCGTGCTTGCCTTCAGAGATTGGGTTGCTGAAGAACTTGACAGTGTTCGATGTGAGCTTTAATCAGCTCTTGGGTCCCTTGCCAGACTCCATTGGAGGCGCGGTGAGCCTTGAGCAGTTGAATGTAGCTCACAATCTGCTTTCTGGGAAAATTCCAGCTAGCATTTGTATGCTACCAAATCTCCAGAACTTCACATATTCATATAACTTCTTCACTGGTGAGCCGCCGGTGTGCCTGAGCTTGCCGTCGTTTGATGATCGGAGAAACTGCTTGCCGGCGAGGCCATTGCAGAGGTCAGCGGCACAATGTAAGTCGTTCTTGTCTCGGCCAGTGGATTGTAATTCATTCAGATGTAAACCATTTGTTCCTTCGCTTCCTTCACCTCCCCACCCATCTCCTCCTATTCCTGTTCCCTCACCTCCACCAGTCACTGTACCTTCACCACCTCCTCCATCACCTGTTTATACTCCACAATCCCCGCCTCCACCGCCACCACCAGTTTACTCTCCTCCTCCACCTTCGCCGCCACCTCAGGTGTATTCACCCCCACCTCCTCCACCGCCGCCACCTCCTCCTCCGCCGGTCTATTCCCCACCACCACCTCCGCCGGTCTATTCTCCGCCACCACCTCCACCTTCCCCACCCCCGCCAGTCTATTCTCCACCTCCACCATCTCCACCGCCACCTTCACCTCCACCACCCCCGCCAGTATATTCACCTCCTCCACCACCTTCGCCTCCACCTCCTTCCGTATCACCACCCCCACCATCGCCTCCCCCTCCATCTCCTCCACCACCTTCACCAACTCCAAACCCACCATATTGTGTTCGGTCACCTCCCCCACCGCCACCAAATTCACCACCCCCACCGCCTCCTGTATTCTCCCCACCTCCGCCAGTGACTTATTATTACAGCTCGCCGCCACCGCCGTCGCCTCCTCACTCGCCTCCACCGCCTCCTCACTCGCCTCCGCCGCCTGTTTACCCCTATTTATCACCGCCACCTCCTCCTCCGGTCCATTCTCCTCCTCCCCCTGTCCATTCACTACCACCACCATCTCCGCCACCTTGTATAGAACCACCTCCACCTCCACCACCTTGTGAAGAGCATCCACCGCCACCACCTTCTCCTACACCCTATTTACCACCCCCATCCCCATCTCCCCCTCCACCACCTCCTGTTCACTATAGTTCTCCACCGCCACCCCCACCTGTTCACTATAATTCACCACCACCACCTGTATACCATTCTCCTCCGCCACCATCACCGCCTCCGTGTGAAACCCCGCCTCCACCTCCCCCGGTTACATATGGAAGCCCACCACCTGCTCCTGTATATGAAGGGCCTTTGCCACCTGTCTTCGGAGTCTCGTACGCATCTCCACCTCCACCACCCTTCTATTGA 2235 0.5347 MKKKVYFPLLIAFFLGTLSLSASTNAPITSHGALTDAEALYIRQRQLLYYRDEFGDRGEKVTVDPSLVFENNRIRNAYIALQAWKQAILSDPLNLTANWVGASVCNYTGVYCTMALDNPKVRTVAGIDLNHGDIAGYLPEELGLLVDLALFHINSNRFCGTVPHKFDKLKLLFELDLSNNRFAGKFPEVVLRLPTLKFLDLRFNEFEGTVPKELFDKDLDAIFINHNRFVFDLPDNFGNSPVSVIVLANNRFHGCIPASLGNMSNLNEIILMNNAFRSCLPSEIGLLKNLTVFDVSFNQLLGPLPDSIGGAVSLEQLNVAHNLLSGKIPASICMLPNLQNFTYSYNFFTGEPPVCLSLPSFDDRRNCLPARPLQRSAAQCKSFLSRPVDCNSFRCKPFVPSLPSPPHPSPPIPVPSPPPVTVPSPPPPSPVYTPQSPPPPPPPVYSPPPPSPPPQVYSPPPPPPPPPPPPPVYSPPPPPPVYSPPPPPPSPPPPVYSPPPPSPPPPSPPPPPPVYSPPPPPSPPPPSVSPPPPSPPPPSPPPPSPTPNPPYCVRSPPPPPPNSPPPPPPVFSPPPPVTYYYSSPPPPSPPHSPPPPPHSPPPPVYPYLSPPPPPPVHSPPPPVHSLPPPSPPPCIEPPPPPPPCEEHPPPPPSPTPYLPPPSPSPPPPPPVHYSSPPPPPPVHYNSPPPPVYHSPPPPSPPPCETPPPPPPVTYGSPPPAPVYEGPLPPVFGVSYASPPPPPFY 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g2013 744 PRINTS Proline rich extensin signature 403 419 - -
Dere06g2013 744 PRINTS Proline rich extensin signature 427 439 - -
Dere06g2013 744 PRINTS Proline rich extensin signature 443 464 - -
Dere06g2013 744 FunFam Leucine-rich repeat extensin-like protein 1 78 239 - -
Dere06g2013 744 SUPERFAMILY L domain-like 78 361 - -
Dere06g2013 744 MobiDBLite consensus disorder prediction 582 731 - -
Dere06g2013 744 FunFam Leucine-rich repeat extensin-like protein 5 240 379 - -
Dere06g2013 744 Pfam Leucine rich repeat N-terminal domain 80 112 IPR013210 -
Dere06g2013 744 Gene3D Ribonuclease Inhibitor 78 237 IPR032675 -
Dere06g2013 744 Gene3D Ribonuclease Inhibitor 238 363 IPR032675 -
Dere06g2013 744 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 20 532 - -
Dere06g2013 744 MobiDBLite consensus disorder prediction 403 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g2013 Dere-ChrDere06 35479886 35482120 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g2013 19 443 Leucine-rich Repeat extension Gene Families AT3G24480 72.300 0.0 635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere06g2013 06 35479886 35482120 Dere06g2013 06 35479886 35482120 ECH