Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1970 ATGGTCAACAAAGCTACCATTCCAGCACATCAGACTACGAGCGCTAATTTGTACACTTCTGGTAATAACGTGATTAACCCCTTCACTGGAGGGCAAAGTCGTCAGATCACATATGTCCAACGAAATGCCAATGCATTAAAACGAACCATACACTCGCGCTTCCTTATTGCGCTTGCTTTACCTCTTGCTCTTCCTCCTCCTTCTTTCACTCCAATTCCCTCTCCCTCTCTCTCTCTCTGCGCTTTCGAGTTGAACGCAAAGTTCAGTTCCGAAGAAGATCCAGAAATTCCAATCCATTCTAACCCAGGACGAGGAAAGCTTAAGGGCTGTTCATCTTGGCTTTTTGGCAGGGAGCTGAAGCGTTCAGTTGACTCAGCGCTTTTGTTCTCGTATTTCTCGTCTGGGTGTGAATTTGGTGTCCTCAGTACATTGCATACGAGTATTTCTTTAGTTCATAACAACAAAATGGATCAAAATCAGCATGGTCTACCAGCTGGAGGAGTGTCTGGCACTTCTGCTCAAGGGGCATATGGCATGAATCAGTATCAATCTAACCAAATAATGGCTCTTCCTCAATCTCCTACTCAGGCAGCAGCAGGTCTTTCTGGCTCTTCTTCCTACCTGAGAGAGCAGCAATATGCTCACCAGTACATCCATCAGGTCCAGCAACAAGAGCTGCGGCAACAACTCCAGAACTTTTGGGCAAATCAGTACCAAGAAATTGAGCAGACTGTTGACTTTAAGAACCATAGCCTGCCTTTGGCTAGGATCAAGAAGATCATGAAGGCTGATGAGGATGTGAGAATGATATCAGCAGAGGCCCCAGTTATATTTGCCCGGGCCTGTGAAATGTTCATTCTAGAGCTAACACTGAGGTCTTGGATCAACGCAGAGGAGAACAAGAGGAGGACGCTTCAGAAGAATGACATTGCAGCAGCAATCACAAGGACTGATGTGTTTGATTTTCTTGTTGATATTGTGCCAAGGGATGACTTGAAGGATGAAATTCTCTCTGGGGTTCCCAGAGGTCAAGCAGAGAACATTCCTTACTACTATATGCCATCTCAGCAAGTTGCAGGTCAACCACCTCCTCCGCCATTTGGTACTCCAAAAGTGATCATGGGTAGGCCTATAGCTGATCAAGCTCATTATGGGCAGCCAACCCACCCTTTCTCGGCACAAATTTGGCCGCACCAGCAAAATCCCTCTACCAATTCAGATTCTTGA 1227 0.4613 MVNKATIPAHQTTSANLYTSGNNVINPFTGGQSRQITYVQRNANALKRTIHSRFLIALALPLALPPPSFTPIPSPSLSLCAFELNAKFSSEEDPEIPIHSNPGRGKLKGCSSWLFGRELKRSVDSALLFSYFSSGCEFGVLSTLHTSISLVHNNKMDQNQHGLPAGGVSGTSAQGAYGMNQYQSNQIMALPQSPTQAAAGLSGSSSYLREQQYAHQYIHQVQQQELRQQLQNFWANQYQEIEQTVDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWINAEENKRRTLQKNDIAAAITRTDVFDFLVDIVPRDDLKDEILSGVPRGQAENIPYYYMPSQQVAGQPPPPPFGTPKVIMGRPIADQAHYGQPTHPFSAQIWPHQQNPSTNSDS 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1970 408 Gene3D Histone, subunit A 213 329 IPR009072 GO:0046982
Dere06g1970 408 FunFam Nuclear transcription factor Y subunit gamma 216 329 - -
Dere06g1970 408 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 206 346 - -
Dere06g1970 408 Pfam Core histone H2A/H2B/H3/H4 234 314 IPR007125 GO:0003677
Dere06g1970 408 MobiDBLite consensus disorder prediction 381 408 - -
Dere06g1970 408 MobiDBLite consensus disorder prediction 392 408 - -
Dere06g1970 408 SUPERFAMILY Histone-fold 208 323 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1970 Dere-ChrDere06 34952183 34954400 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1970 156 377 CCAAT-HAP5 Transcription Factor Family AT1G08970 57.709 4.91e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Dere06g1970 CBFD_NFYB_HMF 1e-16 CL0012