Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1960 ATGTCCCACATAGCTGTCGAAAGGAACAGGAGAAGACAGATGAACGAGCATCTCAAAGTTTTAAGATCTTTGACCCCTCGTTTCTATATCAAAAGGGGAGACCAAGCATCTATAATAGGGGGAGTAATAGATTTCATCAAGGAGTTAAACCAAGTTCTGGAAGCATTGGAATCCCACAAAAGAAGGAAGAGTATAAGCCCTAGTCCAAGAACTCCACGCCCAAGCTTTCAGCTTGATCATAGCCCCTTTAAGGAGGAAGTAGGAGGAGCAAGCTGCAATTCTTCTGTTGCAGATGTGCAAGTGAAAATCTCAGGTTCAAATGTGGTGCTGAGAGTAATTTCCCACAGAATTCCGGGTCAAGTTTCAAAGATAATCAGCGTCTTGGAAAGGCTTTCATTTCAAGTCCTTCATCTCAACATCAGTAGCATGGAGCATACAGTTCTATACCACTTTGTGGTTAAGATAGGGTTGGAGTGCCAGCTAAGTCTGGAGGAACTAGCAGCAGGAGTACAACAAACCTTCTGCTCAGAAGCAGTACATTATCACAGTGGAGATATGTAG 561 0.4332 MSHIAVERNRRRQMNEHLKVLRSLTPRFYIKRGDQASIIGGVIDFIKELNQVLEALESHKRRKSISPSPRTPRPSFQLDHSPFKEEVGGASCNSSVADVQVKISGSNVVLRVISHRIPGQVSKIISVLERLSFQVLHLNISSMEHTVLYHFVVKIGLECQLSLEELAAGVQQTFCSEAVHYHSGDM 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1960 186 Gene3D - 1 63 IPR036638 GO:0046983
Dere06g1960 186 FunFam Transcription factor MUTE 1 66 - -
Dere06g1960 186 SMART finulus 4 55 IPR011598 GO:0046983
Dere06g1960 186 Pfam Helix-loop-helix DNA-binding domain 2 49 IPR011598 GO:0046983
Dere06g1960 186 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 70 IPR036638 GO:0046983
Dere06g1960 186 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 49 IPR011598 GO:0046983
Dere06g1960 186 MobiDBLite consensus disorder prediction 60 80 - -
Dere06g1960 186 PANTHER TRANSCRIPTION FACTOR FAMA 1 174 IPR044283 GO:0003700|GO:0010052
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1960 Dere-ChrDere06 34843572 34845232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1960 1 179 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06120 64.390 1.02e-80 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere06g1960 HLH 4.8e-08 No_clan