Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1956 ATGGGAATTTCTTCGAGTAGCAGAAGAAGAGACAATTATTTTCATAACCCACATCTTCCTTCGCCTTTTTATTACTCTGCAGAATCTCCTCATCCTGCACCTCTACCACCACCGCCTCCGCCTCCGCCGCCGCCCCAAGGCTACTATTTCGCCTCAACCACGCCCTATACACTGCACAGCAATAGCTATGTGACTCCCCCTCCTCTGCCTCCACCTCCTCAGACCCCTATCTTCTGTTACTCAAACGTGTATAGCAATTGTTCCAATTATGCTAATTCTGTGATGGGTAGGTTTAATTATCACCCTTATTATGTCAATCATACTAGTGGGTGGCCGGCGATTTATCCTTCGGTTGGCCCTGTCGTCTCGCCACCACCCTATGTTGATCATCGAACCACCAAGAAGATCAGGAACGATGTGAACGTGCATAAAGATACGTTGCGGTTGGAGGTAGATGAGCACAACCCTGATCAGCACTTGGTTACATTCGTTTTCGATGCCTTATATGATGGGAGCATTACTATATTCTACTTTGCAAAGGAAGAGGAAAAATGTAGGTTAGAACCGCTGTTTCCTGATGTATTTGAGCCAATCAGAGTCCCCTTTCAGAAAGGAGTTGGCCAGAAATTTTGTCAGCCTTCAGGAACAGGCATTGACTTACGGTTCTTTGAGTTGGATGATCTCTCAAAATCCTCACTTGGAGAAGATGTCTTTCCCCTTGTAATATGTGCTGAAACGTGTATGAGAACTTCTTCAGCAGGCGAAAATCTTGGTGATTCAGTGATAGATGTTTCCCCTCACATGCAGATTACTCAAGCCATTGTAGAGAAAGGCAATAGTGGTGGTCCTTTCCAGGTAAAAGTAGACAGGCAGATTCTGTGGACTGATGGTGTTCGTTATGAGTTGAGAGAATTATATGGAATAGGATGCTCGGCAGCGGCAGGTTTTGATGACAATGATCCTGGGAAGGAGTGTGTAATATGCATGACTGAACCAAAAGACACTGCTGTCTTACCTTGTCGACACATGTGCATGTGCAGTGAGTGCGCACAAGCTTTGTGGCTTCAATCGAATAAATGTCCAATATGCCGTCAACCTATTGAGGAACTTATGGAGATCAAGATAAACAATGGTGATTATTGGGATGTTTTCCCTAGATGCTGA 1164 0.4493 MGISSSSRRRDNYFHNPHLPSPFYYSAESPHPAPLPPPPPPPPPPQGYYFASTTPYTLHSNSYVTPPPLPPPPQTPIFCYSNVYSNCSNYANSVMGRFNYHPYYVNHTSGWPAIYPSVGPVVSPPPYVDHRTTKKIRNDVNVHKDTLRLEVDEHNPDQHLVTFVFDALYDGSITIFYFAKEEEKCRLEPLFPDVFEPIRVPFQKGVGQKFCQPSGTGIDLRFFELDDLSKSSLGEDVFPLVICAETCMRTSSAGENLGDSVIDVSPHMQITQAIVEKGNSGGPFQVKVDRQILWTDGVRYELRELYGIGCSAAAGFDDNDPGKECVICMTEPKDTAVLPCRHMCMCSECAQALWLQSNKCPICRQPIEELMEIKINNGDYWDVFPRC 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1956 387 SUPERFAMILY RING/U-box 319 371 - -
Dere06g1956 387 FunFam probable E3 ubiquitin-protein ligase LOG2 309 374 - -
Dere06g1956 387 SMART ring_2 325 363 IPR001841 -
Dere06g1956 387 MobiDBLite consensus disorder prediction 27 47 - -
Dere06g1956 387 CDD mRING-HC-C3HC5_MGRN1-like 323 364 IPR045195 -
Dere06g1956 387 ProSiteProfiles Zinc finger RING-type profile. 325 364 IPR001841 -
Dere06g1956 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 313 374 IPR013083 -
Dere06g1956 387 MobiDBLite consensus disorder prediction 25 47 - -
Dere06g1956 387 PANTHER MAHOGUNIN 25 374 IPR045194 GO:0061630
Dere06g1956 387 Pfam Zinc finger, C3HC4 type (RING finger) 323 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1956 Dere-ChrDere06 34808176 34811345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1956 96 379 C3H Transcription Factor Family AT3G06140 58.446 2.00e-108 321