Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1952 ATGAACGTCATTTCGCTATCAGTGGGCAAGGTACAAGCCACACTGAATTTCCAAAGAGGACTACACAAGGACCCCTTCTTCCACCACCACCCTAAGGACAAGGTGGTGGCCATCATGGGCGCCACCGGCTCCGGCAAGTCCAAGCTTGCCATCGACTTAGCCTCTCACTTTACTCCGGCAGAAATCGTCAACTCCGACAAAATGCAAATCTACAAGGGCCTGGATATCACAACCAACAAGGTCACAGATGAGGAGTGTCAAGGTGTTCCTCACCATTTGCTAGGCATAGCCGATCCCGACTCCGATTTCACGGCCGGCGACTTCATCCACCACGCCTCTTCCGCCGTCGATTCCATCGTCGCCAGACATTGCCTTCCCATCGTAGCCGGTGGTTCCAATTCCTACATCGAAGCCTTAGTGAACCACGACACTGAATTCCGATTAAGGTACGAGTGGTTGTTCCTCTGGGTTGATGTTTCACTTCCCGTGCTCCATTCCTTCTTGTCGGAGCGAGTTGATCGGATGCTCGAGGCTGGCCAAGTTGACGAGGTTCGTCAGATGTTCGATCCTTCCGCTGATTACACAAAAGGGGTTAGAAGGGCGATTGGGGTCCCTGAATTGGACCAGTTTTTGAGAGCAGAGGCTACCGCGGATGAGAGGACGAAGAAGAAGCTTCTAGAATCCGCCATTGCTAGGATGAAACTCAATAACTGCCGGCTTGCGAGTCGTCAGTTGCAGAAGATTCATCGGCTTTACGGCATGTGGAAGCCGAATACACATCGGATTGATGCTACTGAGGCGTTCGTAAGAAGTGGTGAGGAATCAAAGGAGGCGTGGGAGAATCAAGTGGTGAAGAAGAGCCGAAGGATCGTGCACAAGTTCCTGTACGAGGAAAACCATGTTCCAATGTCTCCTACAATTATAATCAACACTGTGCCACCGCCGTCGCCGGTAGCAATGGCCACCGCAGCCCGTTAG 978 0.5215 MNVISLSVGKVQATLNFQRGLHKDPFFHHHPKDKVVAIMGATGSGKSKLAIDLASHFTPAEIVNSDKMQIYKGLDITTNKVTDEECQGVPHHLLGIADPDSDFTAGDFIHHASSAVDSIVARHCLPIVAGGSNSYIEALVNHDTEFRLRYEWLFLWVDVSLPVLHSFLSERVDRMLEAGQVDEVRQMFDPSADYTKGVRRAIGVPELDQFLRAEATADERTKKKLLESAIARMKLNNCRLASRQLQKIHRLYGMWKPNTHRIDATEAFVRSGEESKEAWENQVVKKSRRIVHKFLYEENHVPMSPTIIINTVPPPSPVAMATAAR 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1952 325 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 161 259 - -
Dere06g1952 325 Pfam IPP transferase 69 142 - -
Dere06g1952 325 Pfam IPP transferase 147 246 - -
Dere06g1952 325 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 32 295 IPR039657 -
Dere06g1952 325 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 147 IPR027417 -
Dere06g1952 325 FunFam Adenylate isopentenyltransferase 5, chloroplastic 161 259 - -
Dere06g1952 325 Gene3D - 32 295 IPR027417 -
Dere06g1952 325 Hamap tRNA dimethylallyltransferase [miaA]. 35 270 IPR018022 GO:0008033
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1952 Dere-ChrDere06 34772721 34773698 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1952 149 306 C2H2 Transcription Factor Family AT2G27760 35.135 6.10e-23 97.1