Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1951 ATGTTTCGAATGGCACAACACAATACGTATACACCGCAAATTTCACGACTTCGTTTTCCCAGCTGGTCCGCTATTTCGAAACCATCAATCTCGGAGACTGTGTTTCCAAAGCCCACACTCTATCCAATGTTTACTTCACTACCAATGGCTTCCTCGTCCGCCGCTCTTCGCTGTGAGTCCCTTTCTTGCTCTTGCTGTAGTGCCACCCCCATTTCTTCTGTTGAACACAAAATGTCTTCTCCAGCCAAAATCTTCATTAAAGGGCTTCCTCTTACAACTTCTGAAGGACGTTTGGTTAAGGCATTTTCAGAGTTTGGAGAGGTTAGTGAAGTCAAGCTTCTCATGGATAAAGAAGATGGGCAGTTCCTAGGAATTGCGTATATTTGGTTTGCCAAGGAAGAATCTGCACAATTGGCTGTGAAAGAGATGAATGGAAAGTTCTTCAATGGCAGGTTTATTTATGTCACAATTGCGAAGCCTGGATCATCCAAAAATTGGAGGAACACAGCTCCATACAGATTTTGA 525 0.4343 MFRMAQHNTYTPQISRLRFPSWSAISKPSISETVFPKPTLYPMFTSLPMASSSAALRCESLSCSCCSATPISSVEHKMSSPAKIFIKGLPLTTSEGRLVKAFSEFGEVSEVKLLMDKEDGQFLGIAYIWFAKEESAQLAVKEMNGKFFNGRFIYVTIAKPGSSKNWRNTAPYRF 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1951 174 Gene3D - 64 170 IPR012677 -
Dere06g1951 174 SUPERFAMILY RNA-binding domain, RBD 72 167 IPR035979 GO:0003676
Dere06g1951 174 CDD RRM_SF 84 155 - -
Dere06g1951 174 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 72 166 - -
Dere06g1951 174 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 82 160 IPR000504 GO:0003723
Dere06g1951 174 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 84 153 IPR000504 GO:0003723
Dere06g1951 174 SMART rrm1_1 83 156 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1951 Dere-ChrDere06 34758541 34760505 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1951 82 165 Eukaryotic Initiation Factors Gene Family AT2G36660 30.233 6.99e-08 49.3