Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1908 ATGATGGTAAGTTGTCATTCTTCTTTTTTACGCTCTCGGTGGGATGAGGAAGTTCCTCTGAACGTCGTAAATAATACTAAATTAAAGATAATTGTTTATTGTACTAATGCTAGAATGCTTACCATATTAGATTTGAGATCTTTAGACTCTCTGGAGCAAGGCATACCTGAGTGTTCTTCTAGAGGTGAAGTTGAGGAATGCCCAAGCAGTTTAGAACCTAAATCACCTTCTTCCAAGACCTCTGATTCAGAGAGTCAGTCAAACAATAACCAGTGGCATGGTTTCTTTCGTTTGCTGAAGAAAGGACCCCGAATGCGTTTCCAACCCTTTCAACCGCTTAAAAATGTTCCAAAACTCACCAGAAGAAAAAGCAAGAGATACAGGGAGGACCAGGTCCCAACTATAAATTCTCCACCAATAAGTAATTCAGCTCTGAAGGCAGCTTTTGATACTGAGTTGTACTGCTTTAAAGCTTCCTGGAAAAATTTCTCTTTTGAAGAGATCCTGGCTGCAACCAACAACTTCAGCCATGAGAATGTTATCGGTGAGGGAGGTTATGCTGTCGTTTACAAAGGCAAAATGGCAGATGGGCAATTTGTTGCAATTAAACAGCTGACAAGAGGAACCCAAGAAGAAATGACTGCAGACTTCTTGTCGGAGCTTGGAATTATAGTGCATGTGGACCATCCTAATATTGCTAGATTAATTGGATATGGTGTGGAAGGGGGAATGTTTCTTGTTCTTCAGTTATCTCCACATGGCAGCCTAGCATCCATACTTTATGGACCTCGGGAGAAACTAGATTGGAGCTTAAGGTATAAGATAGCTTTTGGGACTGCTGATGGCCTTCGCTATCTGCATGAGGAATGTCAAAGAAGGATAATTCACAGAGATATCAAGGCTTCTAATATTTTGCTCTCGGAGGATTTTGAAGCCATGATATCTGATTTTGGGCTATCAAAGTGGTTACCTGACCAATGGACTCACCATACCATCTCCAAGATCGAAGGCACGTTCGGCTACCTTCCTCCAGAATTCTTCATGTATGGTTTCGTAGATGAAAAGACTGATGTCTATGCTTATGGAGTGCTATTGTTGGAGCTCATTACCGGACGACAAGCTTTGGATAGCTCACAGAAAAGTTTGGTGATGTGGGCAAAACCATTGCTATCTTCAAATAACATCAAACAGCTTGTTGATCCATGTCTGAATGATGCCTATGATGAAGAGCAGATGAACCTTGTAGTCTTCGTAGCTTCGTTGTGTATAGATCAATCTTCAGTTCAACGACCACACATGAGCCAGGTATTGAAGATTCTAAAACGTGAGGAAGATAGCTTGGAGCTCATGAAAGTACGCCAGAAGTCGAAAATTCAAAGGACATATTCTGAAGAACTCTTTGATGCAGAAGAGTACAACTCTACCAAGTTTTTGAATGATGTGGATCGACATATGGAGACTCTTCTAGGAAAATGTAACCCTGGTGAAGAAGAAAAGCAAGAACATTCAGAACCAGAGTTGAATAGGGTATTATGTAAACAACCTCGGGCCAAAGAAATAACTCAAAACTTTCCATCCCGCTCGGTAGGTCAGAAAATCTTATTCTCCTGCGAATCCAAGCTGGAACCGATGTCTAGGGTTGGGTCTTCGCTATTCCTCCTGTTGATTTCAATCTTCCTGATCCCTCGTGAAGTTTCCAGCTCCTACGCTGGTTCTGCCAGTGCCATCATCAACCCTTCAAAAGTCAAACAGGTTTCATGGAAGCCAAGAGCTTTCGTTTATGAAGGTTTCCTCACGGACTTGGAATGCGACCACTTGATCTCTATAGCCAAATCAGAGTTGAAGAGATCTGCAGTCGCGGATAACGTGTCTGGACAAAGCAAGCTAAGTGAAGTTCGAACAAGCTCAGGGATGTTTATTCCCAAGAACAAGGATCCTATTGTTGCTGGCATTGAGGACAAGATTTCATCATGGACCTTTCTTCCAAAAGAAAATGGGGAAGACATACAAGTATTACGATATGAGCATGGGCAGAAATACGACCCACATTATGATTACTTTGCTGATAAAGTTAATATTGCTCGGGGTGGACATCGAATTGCAACTGTTCTCATGTATCTCACTGATGTGACCAAAGGCGGCGAAACAGTGTTCCCAAATGCAGAGGAACCTCCACGTCACAGAGGTTCTGAAAGAAGCGATGATCTCTCTGAGTGTGCCAAAAAGGGAGTAGCAGTGAAACCACGTAGAGGGGATGCACTTCTGTTCTTTAGTCTCCACCCTAATGCTACCCCAGACACCAACAGTCTCCATGCAGGATGCCCAGTAATTGAAGGTGAAAAATGGTCAGCAACAAAGTGGATTCATGTTGAGTCATTTGATAAGATAGTGGGAGCTGGAGGAGACTGCACTGATCAGCATGAAAGCTGTGAGAGATGGGCTGCACTTGGAGAATGCACTAATAATCCTGAGTACATGGTCGGTTCTACAGACCTTCCTGGCTACTGTAGGAGGAGTTGTAAGGCATGTTAG 2532 0.4285 MMVSCHSSFLRSRWDEEVPLNVVNNTKLKIIVYCTNARMLTILDLRSLDSLEQGIPECSSRGEVEECPSSLEPKSPSSKTSDSESQSNNNQWHGFFRLLKKGPRMRFQPFQPLKNVPKLTRRKSKRYREDQVPTINSPPISNSALKAAFDTELYCFKASWKNFSFEEILAATNNFSHENVIGEGGYAVVYKGKMADGQFVAIKQLTRGTQEEMTADFLSELGIIVHVDHPNIARLIGYGVEGGMFLVLQLSPHGSLASILYGPREKLDWSLRYKIAFGTADGLRYLHEECQRRIIHRDIKASNILLSEDFEAMISDFGLSKWLPDQWTHHTISKIEGTFGYLPPEFFMYGFVDEKTDVYAYGVLLLELITGRQALDSSQKSLVMWAKPLLSSNNIKQLVDPCLNDAYDEEQMNLVVFVASLCIDQSSVQRPHMSQVLKILKREEDSLELMKVRQKSKIQRTYSEELFDAEEYNSTKFLNDVDRHMETLLGKCNPGEEEKQEHSEPELNRVLCKQPRAKEITQNFPSRSVGQKILFSCESKLEPMSRVGSSLFLLLISIFLIPREVSSSYAGSASAIINPSKVKQVSWKPRAFVYEGFLTDLECDHLISIAKSELKRSAVADNVSGQSKLSEVRTSSGMFIPKNKDPIVAGIEDKISSWTFLPKENGEDIQVLRYEHGQKYDPHYDYFADKVNIARGGHRIATVLMYLTDVTKGGETVFPNAEEPPRHRGSERSDDLSECAKKGVAVKPRRGDALLFFSLHPNATPDTNSLHAGCPVIEGEKWSATKWIHVESFDKIVGAGGDCTDQHESCERWAALGECTNNPEYMVGSTDLPGYCRRSCKAC 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1908 843 ProSitePatterns Serine/Threonine protein kinases active-site signature. 294 306 IPR008271 GO:0004672|GO:0006468
Dere06g1908 843 Pfam Protein tyrosine and serine/threonine kinase 178 439 IPR001245 GO:0004672|GO:0006468
Dere06g1908 843 ProSitePatterns Protein kinases ATP-binding region signature. 181 203 IPR017441 GO:0005524
Dere06g1908 843 SMART p4hc 589 789 IPR006620 GO:0005506|GO:0016705|GO:0031418
Dere06g1908 843 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 665 790 IPR005123 -
Dere06g1908 843 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 252 454 - -
Dere06g1908 843 SUPERFAMILY Protein kinase-like (PK-like) 160 466 IPR011009 -
Dere06g1908 843 ProSiteProfiles ShKT domain profile. 803 843 IPR003582 -
Dere06g1908 843 MobiDBLite consensus disorder prediction 721 738 - -
Dere06g1908 843 MobiDBLite consensus disorder prediction 71 89 - -
Dere06g1908 843 MobiDBLite consensus disorder prediction 59 89 - -
Dere06g1908 843 FunFam Prolyl 4-hydroxylase 4 581 790 - -
Dere06g1908 843 SMART serkin_6 175 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere06g1908 843 Gene3D Transferase(Phosphotransferase) domain 1 252 467 - -
Dere06g1908 843 Pfam 2OG-Fe(II) oxygenase superfamily 669 789 IPR044862 -
Dere06g1908 843 Gene3D Phosphorylase Kinase; domain 1 140 249 - -
Dere06g1908 843 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK2 145 249 - -
Dere06g1908 843 PANTHER OS08G0249100 PROTEIN 61 484 IPR046958 -
Dere06g1908 843 ProSiteProfiles Protein kinase domain profile. 175 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere06g1908 843 MobiDBLite consensus disorder prediction 715 738 - -
Dere06g1908 843 Gene3D q2cbj1_9rhob like domain 581 790 - -
Dere06g1908 843 Pfam ShK domain-like 803 843 IPR003582 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1908 Dere-ChrDere06 34009826 34017569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1908 145 477 Trihelix Transcription Factor Family AT5G38560 39.326 1.38e-70 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Dere06g1908 PK_Tyr_Ser-Thr 2.6e-40 CL0016