Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1900 ATGGGAAAAGCACCATGCTGTGAGAAAGTGGGGTTGAAGAAAGGAAGATGGACAGCTGAAGAGGATAAGAAGTTGACTCAACACATTCAACAACATGGTGAAGGTTCTTGGAGGAACTGGTCCAAGAATGCAGGTAAGGTGTTTGAAAAAATGACTAAACCAAACCCCACCCCACAAAGTTATACCAATACTGGATCTGAAGATGCTGCTATAATGGGTTCTTGTTCCTGGAGCCTAAAGTCCCAAGATGAGGCAATATGCCGAATCAATGGTAATGGAGGAGGAGGAGGAAAAGTTGAGACCTTAGGACCATATCAATGGCTAGAAAATGAAATAATGAAGCTTAGTTACATGTTTGAAAGTGGGGCTTTTAAGAACACAAGTGAGAATAATGTGGAACATGAAAACAATTTGATCTTGAGCAGAAACAATAACACGGTAGGGGGAGATTTATATGAATTAGTGGGAAAGGAAATAATGGGTGCAAATGAGAATCTCATGACCAGAAATGATAACACCGTGGAGGGTATTTTTGATTGA 540 0.4037 MGKAPCCEKVGLKKGRWTAEEDKKLTQHIQQHGEGSWRNWSKNAGKVFEKMTKPNPTPQSYTNTGSEDAAIMGSCSWSLKSQDEAICRINGNGGGGGKVETLGPYQWLENEIMKLSYMFESGAFKNTSENNVEHENNLILSRNNNTVGGDLYELVGKEIMGANENLMTRNDNTVEGIFD 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1900 179 Gene3D - 11 65 - -
Dere06g1900 179 CDD SANT 16 39 IPR001005 -
Dere06g1900 179 ProSiteProfiles Myb-like domain profile. 9 38 IPR001005 -
Dere06g1900 179 SUPERFAMILY Homeodomain-like 8 43 IPR009057 -
Dere06g1900 179 Pfam Myb-like DNA-binding domain 14 38 IPR001005 -
Dere06g1900 179 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 39 IPR017930 -
Dere06g1900 179 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1900 Dere-ChrDere06 33905160 33906392 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1900 1 45 MYB Transcription Factor Family AT3G62610 73.333 5.72e-18 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dere06g1900 Myb_DNA-binding 1.6e-05 CL0123