Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1889 ATGCCTATAATTCGAAGCCTAATCCACGATATACGATCCAGGTCGCACCGTGTGGTCCAGGACGGTTCCTCGATGGAGGAGGTGGTCACTGATGGCTTGAAGCAGAGTTCATGGGCCCATATGCCTCAGGAGCTTCTCAGGGAGGTTTTGCTCCGAATTGAGCAGTCTGAGAGCTCTTGGCCGCCGCGGAAGACTGTGGTCGCGTGCGCTGGAGTGTGCCGGAGTTGGAGAGAGATCACCAAGGAGATCGTAAAGACGCCTGAAGTTTCCGCTATGATCACTTTTCCGATCTCCGTCAAGCAGCCTGGCCCTAGAGAGCATCTTCTTCAGTGCTTTATAAAGCGCAACCGCTCCTCCCAAACTTATTATTTGTTCCTCAGTTTAACTAATGCTCTAGCTGATGATGGGAAGTTCCTTCTGGCTGCACGCAAGTGCAGACGTCCCACCTGCACAGATTATATCATCTCACTAGATGCCGTTGATTTGTCAAATGGAAGCAACACCTATATTGGGAAATTGAGATCAAATTTTCTGGGAACAAAGTTCACAATCTATGATGGCCAGCCACCTCATGCAGGTGCTAAAATTACAAAAAGTCGCTCCACTAGGCTGGTGAATCTGAAGCAAGTTTCACCCAGGGTCCCTGCTGGTAACTATCCAGTGGCCCATATATCATATGAGTTAAATGTGCTAGGCTCCAGGGGGCCTAGGAGAATGAATTGTGTCATGGATGCCATTCCTGCCTCTGCAATTGAACCAGGAGGGGTAGCCCCAACACAGACTGAGTTTTATCTTAGCAACATTGATGTGTTTCCTTCATTTCCATTTTTCCGATCAAAATCAAATCGTATGGAAAAATCCCTATCTGGACCCCTGGGTGATCAAAAAGATGGGGTGCTGGTGTTGAAAAACAAATCTCCCAGGTGGCATGAACAGCTTCAGTGTTGGTGCTTAAATTTTCATGGACGAGTGACAGTTGCTTCAGTAAAAAACTTTCAGCTGGTGGCTTCGCCAGAAAATGGGCCTGCGGGACCAGAACATGAGAAGATTATTCTTCAGTTTGGAAAAGTTGGGAAGGATTTGTTTACAATGGATTACCGGTACCCCATCTCAGCATTTCAGGCTTTTGCAATCTGCCTCAGCAGCTTCGATACTAAGATTGCTTGTGAATGA 1173 0.4723 MPIIRSLIHDIRSRSHRVVQDGSSMEEVVTDGLKQSSWAHMPQELLREVLLRIEQSESSWPPRKTVVACAGVCRSWREITKEIVKTPEVSAMITFPISVKQPGPREHLLQCFIKRNRSSQTYYLFLSLTNALADDGKFLLAARKCRRPTCTDYIISLDAVDLSNGSNTYIGKLRSNFLGTKFTIYDGQPPHAGAKITKSRSTRLVNLKQVSPRVPAGNYPVAHISYELNVLGSRGPRRMNCVMDAIPASAIEPGGVAPTQTEFYLSNIDVFPSFPFFRSKSNRMEKSLSGPLGDQKDGVLVLKNKSPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGPEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1889 390 CDD F-box_AtTLP-like 38 82 - -
Dere06g1889 390 Gene3D - 31 85 - -
Dere06g1889 390 FunFam Tubby-like F-box protein 95 390 - -
Dere06g1889 390 SUPERFAMILY Tubby C-terminal domain-like 87 390 IPR025659 -
Dere06g1889 390 ProSitePatterns Tub family signature 2. 375 390 IPR018066 -
Dere06g1889 390 Gene3D Tubby Protein; Chain A 93 390 IPR025659 -
Dere06g1889 390 PANTHER TUBBY-RELATED 23 388 - -
Dere06g1889 390 Pfam Tub family 99 385 IPR000007 -
Dere06g1889 390 Pfam F-box domain 38 85 IPR001810 GO:0005515
Dere06g1889 390 PRINTS Tubby superfamily signature 169 193 IPR000007 -
Dere06g1889 390 PRINTS Tubby superfamily signature 368 390 IPR000007 -
Dere06g1889 390 PRINTS Tubby superfamily signature 347 366 IPR000007 -
Dere06g1889 390 PRINTS Tubby superfamily signature 153 169 IPR000007 -
Dere06g1889 390 PRINTS Tubby superfamily signature 218 245 IPR000007 -
Dere06g1889 390 PRINTS Tubby superfamily signature 302 319 IPR000007 -
Dere06g1889 390 PRINTS Tubby superfamily signature 320 336 IPR000007 -
Dere06g1889 390 SUPERFAMILY F-box domain 23 81 IPR036047 GO:0005515
Dere06g1889 390 ProSitePatterns Tub family signature 1. 320 333 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1889 Dere-ChrDere06 33806806 33809424 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1889 12 390 TUB Transcription Factor Family AT2G47900 75.654 0.0 581
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Dere06g1889 Tub 5e-112 CL0395