Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1885 ATGGGCTGTGTCTTCGGAAGAGAGGCGTCGGCGAAGTCCGTCGGGGAGACGGTGGTGGAGAGGGAGAAAGCGAGGGAGGAGAGGAAAGAGGAAGTTAAATCTGCGAAAGCAGAAGTGAGTGAGGTTCAAAATGGTGGAAATCGGAAGGAAGGTGGTGGAGAGGAGAAGAGTACACGGCCAAGAGGGGAACGGCGGCGATCGTCGAGGCCAAATCCGAGGTTGAGCAATCCTCCTAACCACGTACACGGCGAGCAAGTGGCGGCGGGATGGCCCTCTTGGCTCTCCAAGGTTGCAGGGGAAGCCATAAACGGGTTGACGCCTAGAAGAGCAGACACTTTTGAGAAGCTCGACAAGATTGGCCAAGGTACATACAGCAATGTTTACAAAGCCAGAGATACTTTAAATGGGAAAATCGTTGCCCTAAAGAAGGTCCGATTTGACAATTTGGAGCCAGAGAGTGTGAAATTCATGGCCAGAGAGATTCTCATATTACGTCGTCTGGATCATCCCAATGTTGTCAAACTGGAAGGTTTAGTGACTTCGAGAATGTCATGTAGTTTGTATCTTGTGTTTGAATACATGGAGCATGATTTGGCTGGACTTGCTACGAGCCCAACTATTAAGTTCACTGAGCCTCAGGTTAAATGTTACATGAAACAGCTGTTTTCTGGTCTGGAACACTGTCACAACCGACATGTGTTGCATCGCGATATAAAGGGGTCAAACCTTCTTATTGACAATGAAGGAATTCTTAAAATTGCTGATTTTGGATTAGCTTCCTTCTTTGACCCTAATCACAAGCACCCTATGACAAGTAGAGTGGTGACTTTATGGTATCGACCTCCAGAACTTCTTCTTGGAGCCACTGATTACAGTGTAGGAGTAGACCTCTGGAGTGCTGGCTGCATTCTTGCTGAACTGTTGGCAGGAAAGCCAATTTTGCCTGGTCGAACAGAGGTGGAGCAGCTACATAAGATATTTAAGCTATGTGGTTCTCCTTCTGAAGAGTACTGGAAAAAGTCAAAGTTGCCGCATGCTACTATTTTTAAGCCCCAACAGTCATACAAGCGGTGCATAGCAGAGGTATTTAAAGATTTTCCACCGTCATCCTTGCCACTAATTGAGACCCTTCTTGCAATTGATCCAGCTGAACGTCAGACTGCCACTGCTGCATTGCAAAGTGAATTCTTTACAACAAAACCTTATGCTTGTGAGCCATCTAGTCTTCCAAAATATCCTCCCAGCAAGGAGATGGATGCAAAGCTACGAGATGAGGAAGCTAGAAGATTGAGAGCAGCGGGTAAAGCTAATGCTGATGGGGTTAAGAAATCTCGTCCCCGTGACCGGGGAGGGAGGGGAATACCAGTTCCAGAAGCCAATGCTGAGCTTCAAGCAAATATTGATAGACGGCGATTGATAACACATGCAAATGCTAAGAGCAAGAGTGAGAAGTTTCCTCCTCCCCACCAAGATGGAACTCTTGGCTATCCTTTGGGTTCTTCACATCATATGGATCCAGTTTTTGATCCTCCTGATGTTCCATTTAGTTCTACAAATTTCTCATATCCAAAAGCCAATATTCAAACCTGGTCTGGCCCATTGGTGGAACCGGCTGGTGTGGGTGCACCAAGGAGGAAGAAGAACATGGCAGGTGAATCAAAGTTGTCAAAGAAGGACTCAAAAAGATAA 1689 0.4642 MGCVFGREASAKSVGETVVEREKAREERKEEVKSAKAEVSEVQNGGNRKEGGGEEKSTRPRGERRRSSRPNPRLSNPPNHVHGEQVAAGWPSWLSKVAGEAINGLTPRRADTFEKLDKIGQGTYSNVYKARDTLNGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLATSPTIKFTEPQVKCYMKQLFSGLEHCHNRHVLHRDIKGSNLLIDNEGILKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYSVGVDLWSAGCILAELLAGKPILPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQQSYKRCIAEVFKDFPPSSLPLIETLLAIDPAERQTATAALQSEFFTTKPYACEPSSLPKYPPSKEMDAKLRDEEARRLRAAGKANADGVKKSRPRDRGGRGIPVPEANAELQANIDRRRLITHANAKSKSEKFPPPHQDGTLGYPLGSSHHMDPVFDPPDVPFSSTNFSYPKANIQTWSGPLVEPAGVGAPRRKKNMAGESKLSKKDSKR 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1885 562 MobiDBLite consensus disorder prediction 431 452 - -
Dere06g1885 562 Gene3D Transferase(Phosphotransferase) domain 1 196 436 - -
Dere06g1885 562 MobiDBLite consensus disorder prediction 431 562 - -
Dere06g1885 562 MobiDBLite consensus disorder prediction 547 562 - -
Dere06g1885 562 Gene3D Phosphorylase Kinase; domain 1 101 195 - -
Dere06g1885 562 ProSiteProfiles Protein kinase domain profile. 113 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere06g1885 562 MobiDBLite consensus disorder prediction 514 528 - -
Dere06g1885 562 FunFam probable serine/threonine-protein kinase At1g54610 100 195 - -
Dere06g1885 562 PANTHER CELL DIVISION PROTEIN KINASE 111 401 - -
Dere06g1885 562 SUPERFAMILY Protein kinase-like (PK-like) 108 402 IPR011009 -
Dere06g1885 562 MobiDBLite consensus disorder prediction 1 84 - -
Dere06g1885 562 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Dere06g1885 562 Pfam Protein kinase domain 113 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere06g1885 562 MobiDBLite consensus disorder prediction 14 37 - -
Dere06g1885 562 FunFam probable serine/threonine-protein kinase At1g54610 196 437 - -
Dere06g1885 562 CDD STKc_CDK9_like 113 397 - -
Dere06g1885 562 ProSitePatterns Protein kinases ATP-binding region signature. 119 142 IPR017441 GO:0005524
Dere06g1885 562 MobiDBLite consensus disorder prediction 464 486 - -
Dere06g1885 562 Coils Coil 18 45 - -
Dere06g1885 562 MobiDBLite consensus disorder prediction 48 70 - -
Dere06g1885 562 SMART serkin_6 113 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1885 Dere-ChrDere06 33791349 33796430 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1885 108 435 Core Cell Cycle Gene Families AT5G10270 52.326 3.56e-118 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Dere06g1885 Pkinase 7.6e-69 CL0016