Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1880 ATGGGAGAAAGCGCAATTATCAACAAACTCATATTCACTGCCATGGAAGGTTTCAGAACTGACTCTGTTATGCCATTGCCATTAATCTCTCAAGTTCCACCTTCTTCTGCCGATGAACCTGTTGGAGCCATGGCTGAAGCTGGGAACACCTCCAGAAAGCGCACTAGACAAATGGGTTTAGAGAGGAGTGAGAGCCTTGTGATGGAGCGTGATCGAAGGTTGAAGATGAGTCAGATGTTCGCTGAGCTTCAATCCACCGTCCCTGGTCTCTTTTCTAAGCCTACAAGAGAAGTAATCATCAACGAAACAATAAACTACATCAAGGACCTTGAAAAGAAGAAGAAGAGATTGGAAGAGCTTAAGGGGTTAAAAATGGGACGAGTAGTAGAAGGAGGGAGGTTGATGCTTCCATGTACAAGCAACAGCAATTCCTCCATTACAGTCACAGTATCTGGCAATATTGCCTTCTTTGGGATTCAATCAAAAGCTAAATATGGTCTAATCGCAGTGATCTTCAAGGTGTTCTACAAGCACCATGCTGAAATTCTGGCTGCGAATGTTTCAGTCAACAATGGAGAATTGACACTGGCAGTCACAGCTTTATTAGTTCATGGTGGTGACGATGATGGAAATGTAACTGCTGAGAAGATTAAGACAGAGATTCTGAGTTTGTAG 675 0.4326 MGESAIINKLIFTAMEGFRTDSVMPLPLISQVPPSSADEPVGAMAEAGNTSRKRTRQMGLERSESLVMERDRRLKMSQMFAELQSTVPGLFSKPTREVIINETINYIKDLEKKKKRLEELKGLKMGRVVEGGRLMLPCTSNSNSSITVTVSGNIAFFGIQSKAKYGLIAVIFKVFYKHHAEILAANVSVNNGELTLAVTALLVHGGDDDGNVTAEKIKTEILSL 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1880 224 CDD bHLH_SF 69 109 - -
Dere06g1880 224 Pfam Helix-loop-helix DNA-binding domain 67 111 IPR011598 GO:0046983
Dere06g1880 224 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 52 216 IPR044278 GO:0003700|GO:0006355|GO:0009960
Dere06g1880 224 Gene3D - 50 125 IPR036638 GO:0046983
Dere06g1880 224 SMART finulus 66 116 IPR011598 GO:0046983
Dere06g1880 224 Coils Coil 100 120 - -
Dere06g1880 224 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 60 110 IPR011598 GO:0046983
Dere06g1880 224 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 65 130 IPR036638 GO:0046983
Dere06g1880 224 MobiDBLite consensus disorder prediction 33 60 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1880 39 189 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 29.747 8.62e-09 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere06g1880 HLH 2.1e-06 No_clan