Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1876 ATGGGTGGGTGTTTTCCTTGCTTTGGATCATCCAACAAGGAGGACAAAGGGTTAAAGGAAGTAGCAGGCAAGAAGGATTCGTTCAAAGATGGTTCAATTGCTCAGTCTTACCACACGAATAGGGTTAGCTCAGATAAATCAAAATCTCGAATTGGCTCTGATCCTAAGAAGGAACCACCAGTTCCAAAGGAACCAACAGCCCACATCGCTGCACAAACATTCACATTTCGAGAGCTTGCAGCTGCTACAAAGAATTTTAGGCCAGAATGTTTATTAGGTGAAGGAGGTTTTGGACGTGTTTACAAAGGTCGTCTCGAGAGCACGGGACAAGTAGTTGCTGTAAAACAGCTTGACCGCAATGGACTTCAAGGAAATCGAGAATTCTTGGTGGAGGTTCTTATGCTCAGCCTCTTGCATCACCCAAATCTTGTCAACTTAATTGGTTATTGTGCTGATGGTGATCAGCGGCTTCTTGTTTATGAATTTATGCCATTGGGCTCTTTGGAGGATCATTTACATGATCTTCCTCCTGACAAGGAGCCCCTGGACTGGAACACAAGAATGAAAATAGCCGCTGGTGCAGCCAAGGGATTGGAATATTTGCATGACAAAGCAAACCCCCCGGTAATTTATAGAGACTTAAAATCATCCAACATCCTCCTAGACGAGGATTATCATCCCAAGCTATCAGATTTTGGGCTTGCAAAGCTTGGTCCTGTTGGTGACAAGACTCATGTGTCCACACGAGTAATGGGAACATATGGTTATTGTGCTCCAGAATATGCTATGACAGGCCAACTCACTCTGAAGTCTGATGTGTACAGTTTTGGAGTTGTCTTCCTTGAACTTATTACTGGGCGCAAGGCTATTGATAATTCACGTGCACATGGAGAGCATAATCTCGTTGCCTGGGCACGACCTCTTTTTAAAGACCGTAGGAAGTTCCCCAAAATGGCTGATCCTCTACTTCAAGGGCGTTATCCAATGCGAGGGCTCTACCAAGCACTAGCAGTTGCAGCTATGTGTTTGCAGGAACAAGCTGCTACAAGGCCTCTTATTGGGGATGTTGTGACTGCTCTCACATACCTGGCCTCTCAGACATATGATCCAAATGCAGCCACTCAGGCTAATAGAATTAGTTCATCAACCCCAAGGAGCAGGGATGATAGGAGGAGCATGATAGATGGCTATGTAGATAGCCCTGATCGTGGAAGGAGTGGCTCCCCTTCCACTCATAAGAACTCGCCTGATGTCAGGAGGAGAGATGGTAGGGATCCAAGTGTCGGTACAGATTTAGGCAGGAGCGAAACTGGATCAGGGAGAAGATGGGGATTGGATGATGTAGAAAGGCAGGAATCTCAGAGAGACAGCCCTGTAAATACTGGGAGAGCTAGGGAAGCTCCAAGGAACCGTGACCTTGACAGAGAACGTGCAGTTGCAGAAGCAAAAGTATGGGGTGAAAATTGGAGAGAAAAGAAGAGGGCAAATGCAGTGGGTAGCTTTGATGCTACAAATGAGTGA 1521 0.4609 MGGCFPCFGSSNKEDKGLKEVAGKKDSFKDGSIAQSYHTNRVSSDKSKSRIGSDPKKEPPVPKEPTAHIAAQTFTFRELAAATKNFRPECLLGEGGFGRVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEDYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNSRAHGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYDPNAATQANRISSSTPRSRDDRRSMIDGYVDSPDRGRSGSPSTHKNSPDVRRRDGRDPSVGTDLGRSETGSGRRWGLDDVERQESQRDSPVNTGRAREAPRNRDLDRERAVAEAKVWGENWREKKRANAVGSFDATNE 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1876 506 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672|GO:0006468
Dere06g1876 506 MobiDBLite consensus disorder prediction 465 479 - -
Dere06g1876 506 ProSiteProfiles Protein kinase domain profile. 86 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere06g1876 506 Gene3D Phosphorylase Kinase; domain 1 60 162 - -
Dere06g1876 506 MobiDBLite consensus disorder prediction 32 65 - -
Dere06g1876 506 MobiDBLite consensus disorder prediction 414 429 - -
Dere06g1876 506 Gene3D Transferase(Phosphotransferase) domain 1 163 384 - -
Dere06g1876 506 FunFam Serine/threonine-protein kinase PBS1 61 162 - -
Dere06g1876 506 MobiDBLite consensus disorder prediction 43 63 - -
Dere06g1876 506 SMART serkin_6 86 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere06g1876 506 SUPERFAMILY Protein kinase-like (PK-like) 62 360 IPR011009 -
Dere06g1876 506 PANTHER OS07G0668900 PROTEIN 4 372 - -
Dere06g1876 506 MobiDBLite consensus disorder prediction 440 456 - -
Dere06g1876 506 FunFam Serine/threonine-protein kinase PBS1 163 378 - -
Dere06g1876 506 CDD STKc_IRAK 92 361 - -
Dere06g1876 506 ProSitePatterns Protein kinases ATP-binding region signature. 92 115 IPR017441 GO:0005524
Dere06g1876 506 MobiDBLite consensus disorder prediction 383 398 - -
Dere06g1876 506 MobiDBLite consensus disorder prediction 374 479 - -
Dere06g1876 506 Pfam Protein kinase domain 91 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1876 Dere-ChrDere06 33724019 33730108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1876 4 365 Glycoside Hydrolase AT3G07070 66.116 1.85e-171 488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Dere06g1876 Pkinase 1.1e-46 CL0016