Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1870 ATGTCCTTCCTGAAGGTTTTTACAAGAAACCCATCAATTCGAAGGCTCTATGGTCTTCTCCAACATGGCTCAACATCAACCTTCGCTCACAAGTACGGCACAGCCACTGGAGAGAAAGATTCTTTTACAGTGAAATACCTCATTAAAAATTGTGGGTTCTCCCCAGAAGCCGCATCGGCGATTTCCCATCGCGTCCCTCTCAAGTCCTCGGAAAATCCAGACTTTGTTCTCTCCCTTTTCAAAAGCTGTGGCTTCTCGAACTCTCAGATTCGCGATGTCATCCGGAAGGCTCCAAGATTGCTTCTGAGTGATCCTGCGGAAAACCTTTGGCCTAAGCTTGACTTTTTGCTGTCCAAAGGTGCGTCTTGCTCTCAACTTGTCAACATCGTAACCAAAAGCCCTGGATTCTTATTGAGAAGCTTACAGAATCATATAATACCTTCTTATGATTTTGTTAAAGGATTTGTTGGATCTGATAAAAGAACCATTACATCAATAAATCGTGGTCATAGAATAATTAGTGGTAATGTCCTGGAAACTAATATTAAACTCTTGCTTGACATTGGAGTGCGTAAATCTAGCATTGCTGGATTGCTTTATACATGGCCTAGCTTGCTTACCATGGATTCAGATAAATTTAGAGTGGCAGTTGAAAAGCTAAAGGATTTGGGGCTAGACCCTTCAAAATCATCTTTTATTCCTGCATTGTACGCCACAAATAAGTTAAGCAAATCCATTTGGAATAGTAAGGTTGATTCGTATAAGAAGTGGGGCTGGTCTGAAGAAGAGATCAATAAAGCATTTGCGCTGCATCCTTATTGTATGCTAAAATCTGTATTTAAGATTCAGGCGGTGATGAAATTTTTTGTCAGTGAAATGGGTTGGGACTCTAGTGTGCTTGCCGGTAATCCGATATTAATTTCACTGAGTTTAAAGAAAAGAATCATTGCAAGAGCTTATGTCTTGCGATATCTTCATTCAATAGGCTTAATTAAGAATGCCTGTATCGTGTACCCATATTATATTCGTGAAAAGATGTTCCTTGAGAAATATGTCATTCGTTATGAGGATGAAGCTCCTCAATTATTGAAGTTGTATGAAGAGAAAATGAATAGTTCGAAATAA 1125 0.3929 MSFLKVFTRNPSIRRLYGLLQHGSTSTFAHKYGTATGEKDSFTVKYLIKNCGFSPEAASAISHRVPLKSSENPDFVLSLFKSCGFSNSQIRDVIRKAPRLLLSDPAENLWPKLDFLLSKGASCSQLVNIVTKSPGFLLRSLQNHIIPSYDFVKGFVGSDKRTITSINRGHRIISGNVLETNIKLLLDIGVRKSSIAGLLYTWPSLLTMDSDKFRVAVEKLKDLGLDPSKSSFIPALYATNKLSKSIWNSKVDSYKKWGWSEEEINKAFALHPYCMLKSVFKIQAVMKFFVSEMGWDSSVLAGNPILISLSLKKRIIARAYVLRYLHSIGLIKNACIVYPYYIREKMFLEKYVIRYEDEAPQLLKLYEEKMNSSK 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1870 374 Gene3D Transcription termination factor 3, mitochondrial 166 365 IPR038538 -
Dere06g1870 374 FunFam Mitochondrial transcription termination factor-like 141 359 - -
Dere06g1870 374 SMART mt_12 196 226 IPR003690 GO:0003690|GO:0006355
Dere06g1870 374 SMART mt_12 297 331 IPR003690 GO:0003690|GO:0006355
Dere06g1870 374 SMART mt_12 127 158 IPR003690 GO:0003690|GO:0006355
Dere06g1870 374 SMART mt_12 91 122 IPR003690 GO:0003690|GO:0006355
Dere06g1870 374 SMART mt_12 265 296 IPR003690 GO:0003690|GO:0006355
Dere06g1870 374 PANTHER CGI-12 PROTEIN-RELATED 39 357 IPR003690 GO:0003690|GO:0006355
Dere06g1870 374 Pfam mTERF 77 226 IPR003690 GO:0003690|GO:0006355
Dere06g1870 374 Pfam mTERF 175 331 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1870 Dere-ChrDere06 33664186 33665310 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Dere06g1870 mTERF 6.4e-17 No_clan