Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1868 ATGTATGATTGGCGTCGCAAATCGCTTCTCTACGTCGTGAAGGGATTCATACGAACCTCATCAATCCCATGGCTGCGTGTTCTTCCTCAACATTGCTGCTCCTCACTAGCACCCAACTACAGTACAGCCTCAATCAAGAGGCAGAATTTCAGGATACAGTACCTCGTCGACAATTGTGGGTTCTCCCCAGAAATCGCATCAGAGCTTTCTAAGCAGGTCTCTTTCATTGACTCTCGGAATCCAGATGCTGTTCTTAATCTCTTGAGAAATCTTAATATATCGGATACTAAGATCCGCGATACCATTGAATTGGAACCTTCACTTCTTGCTAGCAATCCTGCGACCAACATTTCGCCAAAGCTAGAGTTTTTCAAGTCTAAAGGCGCTTCAACCTCCCAACTTGCTATCATCGTGACCGCTAACCCCAGGTTCCTTCGCTACAGCTTAAGCAATAATCGCAATACTTATGATTTGATAAATAGTTTCCTCCATTCCGAGGAAAAGACCATTACGTCCATAAAACGCTCTCCCAGAATGATGACTGATTGTTACCTGGAACGGAAAGTTAAGTTCTTGCAAGATTACGGGGTGCCAAAGTCAGGCATTGCTGTGCTTCTTCGTCATTGGCCTGGTATGATAAACTGCAAAATAGATGACTTGAAAAGGAAAGCAGATGAAGTAAAGGAATTGGGATTTCATCCTTCAAAACTATCTTTCATAGAAGCATTGCGCTGCAAATTAGTAGTAAGCAAACCCTCGTGGCAAAGAAAAGTTGAATTGCTTGCGAGGTGGGGTTGGTCCGATGAAATACTTCATAAAGCATTCATCAAGCGTCCTTTCTTTATGCTGACATCTGACAGTAAAATTCAAGAGATGATGACATTTTTTGTCAACCACATAGGTTGGGACTCTTTGAGGCTTGCTAATACTCCAATACTACTTACTTTGAGTTTAAAGAAAAGAATCATTCCTAGGACTTCAGTCTTAGAGTTTCTTCAATCTAAAGGTTTGATTAAGGATGTTAGCTGTACGCACTTTTTGATTTCTGAAAGTATGTTCCGCCGGAAAATTGTGAATTGCTTTTTGGTTGAAGCTCCTCAGTTATTGAAGCTGTATGAAGAGAAACTCAGTCTTGCGAGATAA 1143 0.4138 MYDWRRKSLLYVVKGFIRTSSIPWLRVLPQHCCSSLAPNYSTASIKRQNFRIQYLVDNCGFSPEIASELSKQVSFIDSRNPDAVLNLLRNLNISDTKIRDTIELEPSLLASNPATNISPKLEFFKSKGASTSQLAIIVTANPRFLRYSLSNNRNTYDLINSFLHSEEKTITSIKRSPRMMTDCYLERKVKFLQDYGVPKSGIAVLLRHWPGMINCKIDDLKRKADEVKELGFHPSKLSFIEALRCKLVVSKPSWQRKVELLARWGWSDEILHKAFIKRPFFMLTSDSKIQEMMTFFVNHIGWDSLRLANTPILLTLSLKKRIIPRTSVLEFLQSKGLIKDVSCTHFLISESMFRRKIVNCFLVEAPQLLKLYEEKLSLAR 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1868 380 FunFam Mitochondrial transcription termination factor-like 149 365 - -
Dere06g1868 380 SMART mt_12 272 303 IPR003690 GO:0003690|GO:0006355
Dere06g1868 380 SMART mt_12 99 130 IPR003690 GO:0003690|GO:0006355
Dere06g1868 380 SMART mt_12 203 233 IPR003690 GO:0003690|GO:0006355
Dere06g1868 380 SMART mt_12 135 165 IPR003690 GO:0003690|GO:0006355
Dere06g1868 380 SMART mt_12 33 62 IPR003690 GO:0003690|GO:0006355
Dere06g1868 380 SMART mt_12 304 338 IPR003690 GO:0003690|GO:0006355
Dere06g1868 380 Pfam mTERF 85 291 IPR003690 GO:0003690|GO:0006355
Dere06g1868 380 Pfam mTERF 180 348 IPR003690 GO:0003690|GO:0006355
Dere06g1868 380 Gene3D Transcription termination factor 3, mitochondrial 183 372 IPR038538 -
Dere06g1868 380 Gene3D Transcription termination factor 3, mitochondrial 64 182 IPR038538 -
Dere06g1868 380 PANTHER CGI-12 PROTEIN-RELATED 50 360 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1868 Dere-ChrDere06 33659483 33660625 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Dere06g1868 mTERF 2.1e-21 No_clan