Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1864 ATGCGTGTTCTTCCGCACAAGTTCAGCACAGCCACAAGCACTTTAGAGAAGCAGTATTTCAGGATGAAGTACCTCGTCAACCATTGTGGGTTCTCCCCAGAAACTGCTTCAGAGCTTTCCAAGCAAGTCACTTTCCTTGACTCTCGGATTCCAGACGCTGTCCTCCAACACTTCAGAGATCTTAATATTTCAGATTCTGGGATACGCAATACCATTATGAAGGTACCTGCGCTTATTTCAAGCAATCCTGTCACCAACCTTTCGCCAAAGCTAGAGTTTTTTAAGTCTAGAGGCGCTTCAACCTTCCAACTTGCCCAAATGTTGACCACGAACCCCAGGTTATTTCGCAACGGTTTAAAGACTCTGATAATACCTTCTTATGAGTTGATGAAAAGATTTCTTCATTCTGATTTAATGACCATTTCGTCTATAGCGCGCTATCCCAATCTCATGACTACTTCTCGCACGGTAAAGAATGTTAATCTTTTGCTTGATTACGGGGTGTCTGAGTCAAGCATTGCTCTGCTACTTCGGTTTTGGCCTCTAGTACTCTCCTATCAAACGGATAAGGTGAAAAAGAAGGTTGATGAAGTAAAGGAATGGGGATTTATCCCTTCAAAAACATCTTACCTAGAAGCATTGCGCGTCAAATTATTTGTAAGAAAATCGTCGTGGGAAAGAAAAGTTGAATTGTTTCGGAGGTGGGGTTGGTCAGATGAAACACTTCATAAAGCATTTAGTAAGCGTCCTTCCTGTATGCTGATAGCAGACAGTAAAATTGAGGCCGTGATGCAATTTTTTGTCAACCAAATGGGTTGGGACTCTTCGGTGCTTGCTGAATACCCTATACTTTTGGCTCTATCTTTGGAGAAAAGAATCATTCCTAGGGCTTCTGTCGTGTGGTTTCTTCAGTCTAGAGGTTTGATTGAGAAACATGCTTCTGCTGTTCCCTTTCGTCTCGTTGAAGAAATGTTCCTGAAGAGATTTGTGAATAACTTTAAGAATGAAGCTCCCCAGTTATTGAATCTGTCTGGAAGTAAACGAGTGCTTGATCAAACGAACAGGAAATGCCGAATGTTACAGAAGTATGGTCAAACTCAAAATGGAAGGGGAGGAGAATCTGACAGTGAAGGCAAAGCTCAACAAAAGGAAAATTGTGGACCACCCATAATAGTGATTAGATCATCTGCTGGCTATGGCTTACAGCAAAGCTCTGCTATGGATATAATCTCTGTTGTCCATTTGATCCTATGA 1254 0.4187 MRVLPHKFSTATSTLEKQYFRMKYLVNHCGFSPETASELSKQVTFLDSRIPDAVLQHFRDLNISDSGIRNTIMKVPALISSNPVTNLSPKLEFFKSRGASTFQLAQMLTTNPRLFRNGLKTLIIPSYELMKRFLHSDLMTISSIARYPNLMTTSRTVKNVNLLLDYGVSESSIALLLRFWPLVLSYQTDKVKKKVDEVKEWGFIPSKTSYLEALRVKLFVRKSSWERKVELFRRWGWSDETLHKAFSKRPSCMLIADSKIEAVMQFFVNQMGWDSSVLAEYPILLALSLEKRIIPRASVVWFLQSRGLIEKHASAVPFRLVEEMFLKRFVNNFKNEAPQLLNLSGSKRVLDQTNRKCRMLQKYGQTQNGRGGESDSEGKAQQKENCGPPIIVIRSSAGYGLQQSSAMDIISVVHLIL 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1864 417 PANTHER CGI-12 PROTEIN-RELATED 22 332 IPR003690 GO:0003690|GO:0006355
Dere06g1864 417 SMART mt_12 174 204 IPR003690 GO:0003690|GO:0006355
Dere06g1864 417 SMART mt_12 141 169 IPR003690 GO:0003690|GO:0006355
Dere06g1864 417 SMART mt_12 105 136 IPR003690 GO:0003690|GO:0006355
Dere06g1864 417 SMART mt_12 275 309 IPR003690 GO:0003690|GO:0006355
Dere06g1864 417 SMART mt_12 243 274 IPR003690 GO:0003690|GO:0006355
Dere06g1864 417 SMART mt_12 69 100 IPR003690 GO:0003690|GO:0006355
Dere06g1864 417 MobiDBLite consensus disorder prediction 362 383 - -
Dere06g1864 417 Pfam mTERF 55 203 IPR003690 GO:0003690|GO:0006355
Dere06g1864 417 Pfam mTERF 153 312 IPR003690 GO:0003690|GO:0006355
Dere06g1864 417 FunFam Mitochondrial transcription termination factor-like 119 337 - -
Dere06g1864 417 Gene3D Transcription termination factor 3, mitochondrial 144 339 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1864 Dere-ChrDere06 33588606 33590839 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Dere06g1864 mTERF 7.3e-20 No_clan