Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1863 ATGTCCACCTCTAGAACCTTAGATTCATCTTCATCCTTCAATGGGTGTGAACCAAACCAGACCCAGATGGTTCTGTCTCTTCTTCAGAGAAACACATCCCCTTCTGGTGAGAAAAGAGGAAGAAGAAAGCAATCAGAACCAGGAAGGTTTCTTGGAGTCAGAAGACGCCCCTGGGGTAGATACGCTGCAGAAATAAGGGACCCCACAACAAAAGAAAGGCATTGGCTTGGCACTTTTGACACTGCACAAGAAGCAGCTCTGGCTTATGACAGAGCTGCTCTGTCCATGAAAGGAAGCCAAGCTAGAACAAATTTTATATACTCTGACACCACCTCTTTTCACACTCTTCTTACTCCTTTTGATGTTCAAGCTCTTTTACCAACCTACCAGAGTAGTGTGTCTGAGATATCTCATCTTAACAATTCAAATTCTTCCCACATTGAGATTGAGCCTACTCATACCCAGATGAACAATAATAACATGCTTGTTTCTTCAAATGGGTCAGCTCAAAATGAAGACTTTTCGTTGTTCTCCAATGATTCTAACTCAGGATACTTGGAATGCGTGGTTCCTGATAACTGCTTCAGAAAGAACAATGTGAATGCGAGTGGGAGTTCTTCAAGTGACCAAAAGGGCCAATCTGAAGAAGCCATGAAGATACCACCATTGGCCTCAGGAAGTTCAGATTTTTCTTCTTACCCAAATGAATTCAGTCAAGAACTGTCATGGGATTGGGATTGCAGTGAGCTTTCAGATATATTTAAGAGCAATCCAATTAGGGCTGAAGATGAGTGCTTCATTGGTGAGAGTTCAAGCTATGGGCTAATGACTGATCAATTTGCTTCTGCTTCTGCAAATACCTTTGGGGATGTTGACATGGGATACTCACCCTTCTGA 897 0.4259 MSTSRTLDSSSSFNGCEPNQTQMVLSLLQRNTSPSGEKRGRRKQSEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAQEAALAYDRAALSMKGSQARTNFIYSDTTSFHTLLTPFDVQALLPTYQSSVSEISHLNNSNSSHIEIEPTHTQMNNNNMLVSSNGSAQNEDFSLFSNDSNSGYLECVVPDNCFRKNNVNASGSSSSDQKGQSEEAMKIPPLASGSSDFSSYPNEFSQELSWDWDCSELSDIFKSNPIRAEDECFIGESSSYGLMTDQFASASANTFGDVDMGYSPF 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1863 298 MobiDBLite consensus disorder prediction 35 50 - -
Dere06g1863 298 SUPERFAMILY DNA-binding domain 50 107 IPR016177 GO:0003677
Dere06g1863 298 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700|GO:0006355
Dere06g1863 298 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Dere06g1863 298 FunFam Ethylene-responsive transcription factor 2 49 107 - -
Dere06g1863 298 CDD AP2 49 105 IPR001471 GO:0003700|GO:0006355
Dere06g1863 298 SMART rav1_2 49 112 IPR001471 GO:0003700|GO:0006355
Dere06g1863 298 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700|GO:0006355
Dere06g1863 298 MobiDBLite consensus disorder prediction 1 34 - -
Dere06g1863 298 Gene3D AP2/ERF domain 49 107 IPR036955 GO:0003700|GO:0006355
Dere06g1863 298 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 37 217 - -
Dere06g1863 298 Pfam AP2 domain 52 98 IPR001471 GO:0003700|GO:0006355
Dere06g1863 298 MobiDBLite consensus disorder prediction 1 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1863 Dere-ChrDere06 33574641 33575537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1863 1 291 AP2-EREBP Transcription Factor Family AT5G18560 37.784 8.43e-57 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere06g1863 AP2 1.2e-12 CL0081