Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1862 ATGGAGCGGTACGGCCGGACCAGTGAAGGGTCGCAGTCTGATCCGTCACCGGAATGGACAGGAACGGGAGGCGAAACAGGGCTCGAAGAGTCAGTGTGGCAATTGGAATTGGGTGGTGGTGAATCGTATCCGCAACGGCCCGATGAGGCTGATTGTATTTACTATTTGAGGACTGGTTTTTGTGGGTATGGCCAGCGGTGTCGGTTTAATCATCCCCGTGACCGTGGCGTGGTTATTGGAGCTGCTAGGACTGGAGGGGAACATCCGGAACGAGTAGGCCAGCCTGTGTGCCAGTATTATATGAGGACAGGATCATGCAAATTTGGTCCGTCCTGTAAGTACCACCATCCAAGGCAGGGAGGAGGCACTGTTACCCCTGTGTCACTAAATTATTATGGATATCCATTGAGACCGGGTGAGAAAGAGTGTTCCTATTATGTGAAAACGGGACAATGCAAGTTTGGCGCAACTTGTAAGTTCCATCATCCACAGCCTGCTGGCGTTCAAATTCCAGCACAGACACCAGTTCCCCAAGTTTCACCTCTACCTGTACCAGTACCTTCACCATTATATCCAACTGTACAGCCTCCATCTGGTCCTTCATCACCACAATATGGTGTAATGGTTGCAGCTGCAAGGCCACCTCTTCTACCAGGCTCATTAGTCCATGGTCCCTATGGGCATGTGGTTTTGTCCCCAGCTATGGTACCATTTCCAGGTTGGAGTCCTTATCAGCCTCCTGCAAGCCCTATGGTTCCTTCAAGTACTCCATCTAATGTTGGTTCAACACAGCTTTATGGGATAAGCCAGCTACCTTCTTCAGCACCTACCTATGCTGGACAGTACCAACCATCAGTTCCTTCAGTTGGTCCTTCAGGCAGTAGTCAGAAGGAACACTCATTTCCAGAAAGACCTGGTCAACCAGAATGTCAGTATTATTTGAAAACAGGGGAGTGTAAATTTGGTCCGTCATGCAGATATCATCATCCGCCTGAATTAATTGGACCAAAAACAAATTTGGTCCTTAGTCCTGTGGGCCTTCCTCTACGCCCGGGGGCACCACCTTGCACTCATTATGCACAGCGTGGAGTATGTAAATTTGGTCCAGCATGCAAATTTGATCATCCTATGGGGGCATTGAGTTATAGTCCATCTGCATCTTCCCTGGCTGATATGCCTGTTGCACCCTATCCTGTGGGCTCATCAATTGGCACTCTTGCCCCATCTTCTTCATCATCAGAGTTGCGGCCTGAACTTACCTTGGGATCCAGCAAGGAGACTGCACCATCCAGAATATCTTCATCAATGAGCACATCAACTGCATCAGTTGGCTTGACCTTGTCATCTGGTGGATCCGTTTCTCAAACAAGTGCTCAACAATCTGCTCAGAGTTCCAGTCATTCAGCAATTACCAATAGCACCACAAGTGGCACTGTCTCTCACACCTCAAGTTAA 1455 0.4893 MERYGRTSEGSQSDPSPEWTGTGGETGLEESVWQLELGGGESYPQRPDEADCIYYLRTGFCGYGQRCRFNHPRDRGVVIGAARTGGEHPERVGQPVCQYYMRTGSCKFGPSCKYHHPRQGGGTVTPVSLNYYGYPLRPGEKECSYYVKTGQCKFGATCKFHHPQPAGVQIPAQTPVPQVSPLPVPVPSPLYPTVQPPSGPSSPQYGVMVAAARPPLLPGSLVHGPYGHVVLSPAMVPFPGWSPYQPPASPMVPSSTPSNVGSTQLYGISQLPSSAPTYAGQYQPSVPSVGPSGSSQKEHSFPERPGQPECQYYLKTGECKFGPSCRYHHPPELIGPKTNLVLSPVGLPLRPGAPPCTHYAQRGVCKFGPACKFDHPMGALSYSPSASSLADMPVAPYPVGSSIGTLAPSSSSSELRPELTLGSSKETAPSRISSSMSTSTASVGLTLSSGGSVSQTSAQQSAQSSSHSAITNSTTSGTVSHTSS 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1862 484 SUPERFAMILY CCCH zinc finger 354 380 IPR036855 GO:0046872
Dere06g1862 484 ProSiteProfiles Zinc finger C3H1-type profile. 350 378 IPR000571 GO:0046872
Dere06g1862 484 MobiDBLite consensus disorder prediction 1 27 - -
Dere06g1862 484 SUPERFAMILY CCCH zinc finger 48 74 IPR036855 GO:0046872
Dere06g1862 484 Gene3D - 126 170 - -
Dere06g1862 484 ProSiteProfiles Zinc finger C3H1-type profile. 91 119 IPR000571 GO:0046872
Dere06g1862 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 139 164 IPR000571 GO:0046872
Dere06g1862 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 353 377 IPR000571 GO:0046872
Dere06g1862 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 94 118 IPR000571 GO:0046872
Dere06g1862 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 306 331 IPR000571 GO:0046872
Dere06g1862 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 73 IPR000571 GO:0046872
Dere06g1862 484 Gene3D - 302 388 - -
Dere06g1862 484 Gene3D - 44 125 - -
Dere06g1862 484 ProSiteProfiles Zinc finger C3H1-type profile. 304 332 IPR000571 GO:0046872
Dere06g1862 484 SUPERFAMILY CCCH zinc finger 139 165 IPR036855 GO:0046872
Dere06g1862 484 ProSiteProfiles Zinc finger C3H1-type profile. 137 165 IPR000571 GO:0046872
Dere06g1862 484 MobiDBLite consensus disorder prediction 277 301 - -
Dere06g1862 484 MobiDBLite consensus disorder prediction 277 306 - -
Dere06g1862 484 SUPERFAMILY CCCH zinc finger 92 119 IPR036855 GO:0046872
Dere06g1862 484 SUPERFAMILY CCCH zinc finger 308 332 IPR036855 GO:0046872
Dere06g1862 484 PANTHER PROTEIN PHOSPHATASE RELATED 34 412 - -
Dere06g1862 484 MobiDBLite consensus disorder prediction 406 484 - -
Dere06g1862 484 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Dere06g1862 484 SMART c3hfinal6 91 118 IPR000571 GO:0046872
Dere06g1862 484 SMART c3hfinal6 350 377 IPR000571 GO:0046872
Dere06g1862 484 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Dere06g1862 484 SMART c3hfinal6 304 331 IPR000571 GO:0046872
Dere06g1862 484 SMART c3hfinal6 137 164 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1862 Dere-ChrDere06 33566274 33572076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1862 1 426 C2H2 Transcription Factor Family AT5G18550 60.502 4.79e-159 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dere06g1862 zf-CCCH 3.7e-08 CL0537