Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1861 ATGTCACTGGCTTCTCCCGCCACTAGATCGCTCTTAGCAATCTTGCTTCGAATTCGATTCAGGAGGCAGAGCCTTGCTGATCGGTGGAAAGCGGCAAAATCTTTGAATGTCGTGTTTGGTGTCGATTTTCTGAATGGACCTAAACTGAGAAAATCAGGGAAATTACTCATGGCCCCATCTAGAAAATCTAGAAGTGTGAATAAGAGGTTTTCAAATATTCATGAAGCTGCATCTAATAAAGATAAAAATACAGAGAATGTTAGCAAAACTAGGCAGCAGGGGAGTCCTGGAATTCAGAAGAAGAGAAAGTTGGCTGACATGTTAGGGCCACAATGGAGTAAGGAGGAGCTAGAACAATTCTATGAAGCTTACCGTAAATATGGGAAAGACTGGAAGAAGGTTACAGCTGCAGTACATAATAGATCTTTGGAAATGGTAGAAGCTCTGTATTCAATGAATCGAGCATATTTATCTCTTCCAGAGGGCACTGCTTCTGTGGTTGGACTCATAGCAATGATGACAGATCATTATAGTGTACTGGGAGGAAGTGATAGTGGACAAGAAAGCAATGAAGATACAGAAACATATAGAAAGCCTCAAAAACGTTTGCGTGGAAAGTCTCTAGATGGCAACTATAAAGCATTCGATGGGCATTTTTCAGATCATTCCCAGTCCCATTCGGTTGCGTCAGGTGATGGTTGCCTGTCATTGTTGAAGAAGAGGCATTCTGGAATCAGGCCTGTTCGAAAAAGAACTCCTCGTGTTCCTGTTTCATATTCAATTGGTAAAGATATTGGGGAAAAGTATTTTTCACCTGCTAGGCAAGGTTATAGGCAAATGGATGACAGTAATGATGTTACTCATAAGATTGCATTAGCATTGACAGAGGCTTCACAAAGAGGTGGCCCTTCCAAAGTTTCTGGTACATCAAACAACAAATCTAAGGGCATTATGTCATCACCTAGTCAGACCAATGGGATGAAGCATGCTAAATCTGAAGTGGCAGGAGCCAAGTTTTACCATTCTGACTTAAATGAGGGTAGCTCGGAATTGAGTTTAGGAAGCACTGAATGTGATAATGGAGATTATTCTGGAAAACTGAGTCAAAGGAGCAGTAGAGAAAGTGCTAGAAGAGGAAATAATAAAGAAAAGGAAACAAAATACAACAGAAAAATGTTTGAACTTGAAGAAAATGCAAATAAACATTTGGATGAAGTAAAGGAAGCCTCCAGTGGGACAGATGAGGGTAAAAAACTGCGTTTTGCCAAGTCTAAAATTGACACTAATTTTGCTGGTGCAAAAAATGCTAGGTCATCTTTCAAGGGTTTCAGGAAAAATAGTAAGAAAGTACTGTTTGAAAAAGATGGTGGTTCTTCTTTTGATGCTCTGAATGCTTTGGCTGATGTGTCTTTGATGATGCCAGTAACAAACCCTGACACTGAGTCATCTGTTCAGGTGATTGAAGAAAACCAAGCAGTTGTTGATGAGTCTAAAGTGGAAACACATCATGCATTTCCAAAGGACAAAAGCACTGCATTAAGCAAAGTGGGCAAGGTTTCTTCTGATAATGGAGCTTCTGTTCCTCAAATAGAGGGAGCTTTCGTGCTTGATGCTGGAATAAGGAAAAAGAGACAAAAAATTTCAATATTAAAAGCTACTGATGAGGTGAAGAAGTCTGTTATTAAAGGTAAGCGCTCTTCTGTTTCTACATCACAGTCAAAACAACTCAAGGTGGTGAAACCCCCAGGAAAGATGTCTTCAACTACTGCTGAAAAAGAGGCAAGGGATAATTCATCTTCATCACCCATAAAAGTTTCATCTACAAATCAAGGCAGTCTAGCAAACAAGGGAAGGCATAGACGAAAGATGGAAAAACCAAAACCAATGCTGCAACGAGATACTAAGGTGTCAGAAAATAATTTTAGGGGTGAACATATTAAATCCATTCTCCAGAACAGTTTATTAAATCAAAAGGAAATGCTTGTTAATTGCCTGGCTTCTCATCAAATACGGCGATGGTGCACTTTTGAATGGTTTTACAGTGCTATAGATTACCCATGGTTTGCAAAAAGGGAGTTCATGGAGTACTTGGACCATGTTGGATTAGGTCATGTTCCTAGATTGACTCGTATTGAGTGGGGAGTCATTAGGAGTTCTCTTGGCAGACCTCGGAGATTTTCTGAGCAATTTTTGATAGAAGAAAAAACTAAATTAAATCAATATCGGGAATCTGTTAGAACGCATTATGCAGAACTTCTTGCTGGTACCAGGGAAGGCCTTCCAACTGATTTGGCCAGGCCTTTAATTGTCGGACAACGTGTTATTGCTATTCACCCTATGACAAGAGAGATTCACGATGGAAGTATACTAACTGTTGACAGCTGTAGGTGTCGGGTTCAGTTTGACCAGCCCGAACTGGGAGTTGAACTTGTCATGGATATTGACTGCATGCCTCTGAATCCTTTTGAAAATATGCCTGCATCTTTGATAAGGCACATTGTCACTCCTGCTAAAGTAAATGAGAATCTTGTTGAGCTCAAGCTGAATGGGAAACTGAAAGAAGGAAAGATTGAAGAGCACAGGATACTGTCGCCTAATGAGAATTCAGATTACCTTCAAACTCTTGATATACCCCCCTCTGCTCGTGGCATCAACAGTTTATCTAAACAGGTTATTTCTGCATGCTCCAAATCACAAGCTAATGTTGCCTGCAATGAGATTGGTAATGCCCGCCTATTGGCAAGTTCTCGAGCTTTCGTTCTTGAACATGTCCAATCCAAAGAAGCCAGCATACATGCTATTTCTGAGCTGACTCGTGCTCTTGACAAAAAGGAAATTGTGTTGTCTGAACTGAAGCACATGAATGATGATGCATCAGAAAGCCAGAAATATGGGGACAACTTTTTGATGGATTCAGAGCCATTTAAGAGGCATTATGCTGCAGTGTTGTTGCAGTTAAATGAATTGAATGAACAGGTTTCTTCTGCCTTGTTTTGCATGAGACAGCATAACACTTATCAAGGGAGTTCCTCCACTTTGTCACTAAAGCCCGTGGTTAATTTTGATGATCCTGGTGGCCAAGCTAGCTCTTCAAATTGTTCAGCTTCTCCCAACCAAAATTATAAATCTCATATTGCTGAAATTGTTGAAAGTTCTAGAAGAAGAGGCCAAACAATGGTTGTTGCAGCTATGCAGGCAATGTCATCTTTTAGTAAGAGGGAAAATAAGGTTGAAGGAATTGAGGAGGCAATTCTTTTTATAAATAATCGGCTTTCAGTGGATGACCATGCTGCTTCAGCCATGCAACTCAGGCCTACTGATTCTGTACATGTCACTCTAGCTTCTCAGGATCAATTGACTCCCAGTAAATTAAATCCCTTGCCAAACAGTCATTTACAAGATCCTAAACTTAACAGTTCATCTGACCACAATGAAGTGAAAATTCCATCAGAACTTATTTCTCAATGTCTAGCTACATTGCTCATGATTCAGAAGTGTACAGAACGACAATTCCCCCCTGCTGATGTTGCTCATGTGCTAGATTCTGCAGTCACCAGTTTGCAGCCATTCTGTTCAAAGAATCTTCCAATATACGGGGAGATACAGAAATGCATGGGTATCATCAGGAATCAAATATTGGCACTCATACCCACCTAA 3657 0.4033 MSLASPATRSLLAILLRIRFRRQSLADRWKAAKSLNVVFGVDFLNGPKLRKSGKLLMAPSRKSRSVNKRFSNIHEAASNKDKNTENVSKTRQQGSPGIQKKRKLADMLGPQWSKEELEQFYEAYRKYGKDWKKVTAAVHNRSLEMVEALYSMNRAYLSLPEGTASVVGLIAMMTDHYSVLGGSDSGQESNEDTETYRKPQKRLRGKSLDGNYKAFDGHFSDHSQSHSVASGDGCLSLLKKRHSGIRPVRKRTPRVPVSYSIGKDIGEKYFSPARQGYRQMDDSNDVTHKIALALTEASQRGGPSKVSGTSNNKSKGIMSSPSQTNGMKHAKSEVAGAKFYHSDLNEGSSELSLGSTECDNGDYSGKLSQRSSRESARRGNNKEKETKYNRKMFELEENANKHLDEVKEASSGTDEGKKLRFAKSKIDTNFAGAKNARSSFKGFRKNSKKVLFEKDGGSSFDALNALADVSLMMPVTNPDTESSVQVIEENQAVVDESKVETHHAFPKDKSTALSKVGKVSSDNGASVPQIEGAFVLDAGIRKKRQKISILKATDEVKKSVIKGKRSSVSTSQSKQLKVVKPPGKMSSTTAEKEARDNSSSSPIKVSSTNQGSLANKGRHRRKMEKPKPMLQRDTKVSENNFRGEHIKSILQNSLLNQKEMLVNCLASHQIRRWCTFEWFYSAIDYPWFAKREFMEYLDHVGLGHVPRLTRIEWGVIRSSLGRPRRFSEQFLIEEKTKLNQYRESVRTHYAELLAGTREGLPTDLARPLIVGQRVIAIHPMTREIHDGSILTVDSCRCRVQFDQPELGVELVMDIDCMPLNPFENMPASLIRHIVTPAKVNENLVELKLNGKLKEGKIEEHRILSPNENSDYLQTLDIPPSARGINSLSKQVISACSKSQANVACNEIGNARLLASSRAFVLEHVQSKEASIHAISELTRALDKKEIVLSELKHMNDDASESQKYGDNFLMDSEPFKRHYAAVLLQLNELNEQVSSALFCMRQHNTYQGSSSTLSLKPVVNFDDPGGQASSSNCSASPNQNYKSHIAEIVESSRRRGQTMVVAAMQAMSSFSKRENKVEGIEEAILFINNRLSVDDHAASAMQLRPTDSVHVTLASQDQLTPSKLNPLPNSHLQDPKLNSSSDHNEVKIPSELISQCLATLLMIQKCTERQFPPADVAHVLDSAVTSLQPFCSKNLPIYGEIQKCMGIIRNQILALIPT 1218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1861 1218 Pfam DIRP 678 779 IPR033471 -
Dere06g1861 1218 SUPERFAMILY Homeodomain-like 108 154 IPR009057 -
Dere06g1861 1218 Pfam Myb-like DNA-binding domain 111 146 IPR001005 -
Dere06g1861 1218 MobiDBLite consensus disorder prediction 348 370 - -
Dere06g1861 1218 Coils Coil 934 954 - -
Dere06g1861 1218 MobiDBLite consensus disorder prediction 300 329 - -
Dere06g1861 1218 SMART DIRP_2 679 780 IPR033471 -
Dere06g1861 1218 SMART sant 108 156 IPR001005 -
Dere06g1861 1218 MobiDBLite consensus disorder prediction 78 99 - -
Dere06g1861 1218 MobiDBLite consensus disorder prediction 563 577 - -
Dere06g1861 1218 CDD SANT 112 146 IPR001005 -
Dere06g1861 1218 MobiDBLite consensus disorder prediction 592 614 - -
Dere06g1861 1218 ProSiteProfiles SANT domain profile. 107 144 IPR017884 -
Dere06g1861 1218 MobiDBLite consensus disorder prediction 348 386 - -
Dere06g1861 1218 MobiDBLite consensus disorder prediction 181 203 - -
Dere06g1861 1218 MobiDBLite consensus disorder prediction 560 634 - -
Dere06g1861 1218 MobiDBLite consensus disorder prediction 371 386 - -
Dere06g1861 1218 Gene3D - 51 164 - -
Dere06g1861 1218 PANTHER LIN-9 57 1218 IPR010561 GO:0006351|GO:0017053
Dere06g1861 1218 MobiDBLite consensus disorder prediction 1119 1143 - -
Dere06g1861 1218 MobiDBLite consensus disorder prediction 295 331 - -
Dere06g1861 1218 Pfam LIN9 C-terminal 933 1002 IPR045831 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1861 Dere-ChrDere06 33530041 33552663 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dere06g1861 DIRP 1.3e-29 No_clan