Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1859 ATGGATCCTGCAAGGGACGCAGGTGGTATCGCGGGGACGGTGCTAATTCCCATGCGGTTTGTGTGGTCTTATGGTGGAAGAAATGTGTATCTCAGTGGTTCTTTCACACGGTGGTCTGAGCTTCTGCTTATGTCGCCAGTTGAAGGTTGCCCAACCGTATTTCAAGTTATTCATAGCTTGACCCCTGGTTACCATCAGTACAAGTTTTTTGTTGATGGAGAATGGCGACATGATGAGCATCAACCTTATGTACGTGGGGAATATGGGATGGCTAACACTATATTCTTGGCTACTGACCCTAACGACATGCCTGTTTTGACTCCAGAAGTAGCTTCTGCTTCTAGCATGGATGTGGATAACGAGGCTATTCGGCGCATGGTTCGGTTGACAGATGGTACATTGACTGAGGTATTGCCAAGAATCTCAGATGCTTATGTACAGATCTCCCGCCAGCGTATTTCTGCTTTCTTGTCTATGCACACAGCTTATGAATTACTTCCTGAGTCAGGCAAGGTTATTGCCGTGGATGTTGGTCTGCCAGTGAAACATGCATTTCATATATTGCATGAGCAGGGAATACCTATGGCTCCTCTTTGGGACTTCTGCAAGGGGCAGTTTGTTGGCGTTCTTAGTGCTCTGGATTTTATTTTGATTTTAAAGGAGCTTAAGAATCATGGATCCAATCTAACAGAAGAAGAGCTTGAAACACATACCATATCTGCTTGGAAAGAAGGAAAATTATATCTAAACAGACAACACAATGGACATGGAACGGCTTATACACAACGTTTTATCCATGCAGGGCCATTTGATAATTTAAAAGATATTGCCATGAAGATTCTGCAACATGAGGTTTCAACGGTTCCTATCATCCATTCAATGTCTGAAGATGGTTCATTTCCACAGCTTTTACATCTTGCTTCACTTTCTGGAATACTTAATTGCATTTGCAGGTATTTTAGGCATTGCTCTAGTTCATTGCCTATACTCCAATTACCAATTTATGCAGTTCCTGTGGGAACATGGGTGCCCAAAATTGGGGAGTCAAATCGGCGACCTTTAGCAATGTTGAGACCAAGTGCTTCTCTTAATTCGGCTCTAAATTTATTAGTTCAAGCACAAGTAAGTTCTATACCAATAGTGGATGATAATGACTCGTTACTAGATATATATTGTCGGAGTGATATAACAGCTTTGGCAAAGGATAGAGCTTATACACATTTGAATTTTGACGAAATGACTGTTCATCAGGCACTGCAGTTGGTTCAGGATTCATGTCATTCTTATGATCTGAGAAGTCAACGATGTCAGATGTGTCTGAGATCTGATTCTCTGGATAAAGTGATGGAACGGTTGGCAAATCCAGGCATCAGGCGGCTAGTTGTTGTGGAAGCCGGCAGCAAGCGTGTAGAAGGCATTGTTTCATTGAGTGACATATTCAAGTTCTTCCTTGGTTAG 1458 0.4239 MDPARDAGGIAGTVLIPMRFVWSYGGRNVYLSGSFTRWSELLLMSPVEGCPTVFQVIHSLTPGYHQYKFFVDGEWRHDEHQPYVRGEYGMANTIFLATDPNDMPVLTPEVASASSMDVDNEAIRRMVRLTDGTLTEVLPRISDAYVQISRQRISAFLSMHTAYELLPESGKVIAVDVGLPVKHAFHILHEQGIPMAPLWDFCKGQFVGVLSALDFILILKELKNHGSNLTEEELETHTISAWKEGKLYLNRQHNGHGTAYTQRFIHAGPFDNLKDIAMKILQHEVSTVPIIHSMSEDGSFPQLLHLASLSGILNCICRYFRHCSSSLPILQLPIYAVPVGTWVPKIGESNRRPLAMLRPSASLNSALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDRAYTHLNFDEMTVHQALQLVQDSCHSYDLRSQRCQMCLRSDSLDKVMERLANPGIRRLVVVEAGSKRVEGIVSLSDIFKFFLG 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1859 485 ProSiteProfiles CBS domain profile. 431 485 IPR000644 -
Dere06g1859 485 Gene3D Immunoglobulins 13 96 IPR013783 -
Dere06g1859 485 FunFam Sucrose nonfermenting 4-like protein 13 98 - -
Dere06g1859 485 SUPERFAMILY E set domains 16 97 IPR014756 -
Dere06g1859 485 SMART cbs_1 171 220 IPR000644 -
Dere06g1859 485 SMART cbs_1 353 401 IPR000644 -
Dere06g1859 485 SMART cbs_1 435 484 IPR000644 -
Dere06g1859 485 Gene3D - 333 485 IPR046342 -
Dere06g1859 485 Pfam CBS domain 437 484 IPR000644 -
Dere06g1859 485 Pfam CBS domain 351 397 IPR000644 -
Dere06g1859 485 Pfam Glycogen recognition site of AMP-activated protein kinase 16 95 IPR032640 -
Dere06g1859 485 SUPERFAMILY CBS-domain pair 152 322 IPR046342 -
Dere06g1859 485 SUPERFAMILY CBS-domain pair 350 484 IPR046342 -
Dere06g1859 485 Gene3D - 143 325 IPR046342 -
Dere06g1859 485 CDD E_set_AMPKbeta_like_N 17 95 - -
Dere06g1859 485 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 145 483 - -
Dere06g1859 485 ProSiteProfiles CBS domain profile. 165 227 IPR000644 -
Dere06g1859 485 ProSiteProfiles CBS domain profile. 349 406 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1859 Dere-ChrDere06 33510687 33524259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1859 6 99 Protein tyrosine phosphatase (PTP) family AT3G01510 34.375 5.89e-07 50.1