Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1858 ATGGGAGAATGCTTCGCCATCTTTTTGTTTTTAGGCGATGGCATTGCTCGTATTTATGGTCTTGATGAAGTAATGGCAGGTGAATTAGTAGAATTTGAAGAGGGTACAATAGGCATTGCTTTGAATTTGGAATCAAATAATGTTGGTGTTGTATTAATGGGTGACAGTTTGATGATACAAGAGGGCAGTTCTGTAAAAGCAACAGGAAGAATTGCTCAGATACCAGTAAGTGAGGCTTATTTGGGTCATGTTATAAATGCCCTGGCTAAACCTATCGATGGTCGAGGAGAAATTTCAGCTTCTGAATCTCGGTTAATTGAATCTCCCGCTCCCGGTATTATTTCGAGACGTTTCGTATATGAGCCTCTTCAAACAGGACTTATTGCTATTGATTCGATGATCCCTATAGGGCGTGGTCAGCGAGAATTAATTATTGGGGATAGACAAATCAGTAAAACAGCAGTAGCCACATATACCATTCTCAATCAACAAAGACAAAATGTAATATGTGTTTATGTAGCTGTTGGTCAAAAAGCATCTTCTGTGGCTCAAGTGGTGACTACTTTACAAGAAAGGGGAGCAATGGAATATACTATTGTAGTAGCTGAAACAGCGAATTCTCCAGCTACATTACAATACCTCGCTCCTTATACAGGAGCAGCTCTGGCTGAATATTTTATGTACCGTGAACGACACACTTTAATCATTTATGACGATCCCTCCAAACAAGCACAGACTTATCGCCAAATGTCTCTTCTATTACGAAGACCACCGGGTTGCGAAGCTTATCCGGGAGATGTTTTTTATTTGCATTCACGCCTTTTGGAAAGAGCCGCTAAATCAAGTTCTCAGTTAGGTGAAGGAAGTATGACTGCTTTACCAATAGTTGAGACCCAATCGGGAGATGTTTCAACTTATATTCCTACTAATGTAATTTCCATTACAGATGGCCAAATATTTTTATCCGCCGATCTATTCAATGCTGGAATCAGACCTATGATTAATGTGGGTATTTCCATCTCCAGAGTTGGATCTGCAGCTCAAATTAAAGCCATGAAGCAGGTAGCTAGTAAATTAAAATTAGAATTGGCACAATTCGCAGAATTAGAAGCTTTTGCACAATTCACTTTTGATATCGATAAAGCTACTCAAAATCAATTGGCAAGAGGTCAACGATTGCGCAAGTTGCTCAAACAATCCCAATCGGCCCCTCTCACTGTAAAAGAACAGATAATAACTATTTATACCGGAACGAATGGTTATCTTGATTCATTAGAAATTGGACAGGTAAGGAAATTTCTTGTCGAGTTACGTGCTTACTTAAAAACGAATAAACCTCAATTCCAAGAAATCATATCTTCTATCAAGATATTTACTCGGGAAGCAGAAGCCCTTTTGAAAGAAGCTATTCAGGAACAAATGGAACTCTTTTTACTTCAGGAACAAGTAGAAAAAAAATTGATTAAGAATTTCATTTAA 1479 0.3827 MGECFAIFLFLGDGIARIYGLDEVMAGELVEFEEGTIGIALNLESNNVGVVLMGDSLMIQEGSSVKATGRIAQIPVSEAYLGHVINALAKPIDGRGEISASESRLIESPAPGIISRRFVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQISKTAVATYTILNQQRQNVICVYVAVGQKASSVAQVVTTLQERGAMEYTIVVAETANSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDPSKQAQTYRQMSLLLRRPPGCEAYPGDVFYLHSRLLERAAKSSSQLGEGSMTALPIVETQSGDVSTYIPTNVISITDGQIFLSADLFNAGIRPMINVGISISRVGSAAQIKAMKQVASKLKLELAQFAELEAFAQFTFDIDKATQNQLARGQRLRKLLKQSQSAPLTVKEQIITIYTGTNGYLDSLEIGQVRKFLVELRAYLKTNKPQFQEIISSIKIFTREAEALLKEAIQEQMELFLLQEQVEKKLIKNFI 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1858 492 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 73 347 IPR027417 -
Dere06g1858 492 Gene3D - 7 71 IPR023366 -
Dere06g1858 492 CDD F1-ATPase_alpha_CD 71 344 IPR033732 GO:0032559
Dere06g1858 492 PANTHER ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 11 477 IPR005294 GO:0015986|GO:0045261|GO:0046933
Dere06g1858 492 CDD ATP-synt_F1_alpha_C 352 477 IPR000793 GO:0015986
Dere06g1858 492 CDD ATP-synt_F1_alpha_N 9 70 - -
Dere06g1858 492 FunFam ATP synthase subunit alpha 71 348 - -
Dere06g1858 492 Hamap ATP synthase subunit alpha [atpA]. 5 478 IPR005294 GO:0015986|GO:0045261|GO:0046933
Dere06g1858 492 Gene3D - 72 348 IPR027417 -
Dere06g1858 492 Pfam ATP synthase alpha/beta family, beta-barrel domain 11 69 IPR004100 GO:0046034|GO:1902600
Dere06g1858 492 NCBIfam F0F1 ATP synthase subunit alpha 11 474 IPR005294 GO:0015986|GO:0045261|GO:0046933
Dere06g1858 492 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 349 476 - -
Dere06g1858 492 Gene3D - 349 477 IPR038376 -
Dere06g1858 492 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 9 71 IPR036121 GO:0046034|GO:1902600
Dere06g1858 492 FunFam ATP synthase subunit alpha 349 479 - -
Dere06g1858 492 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 126 341 IPR000194 GO:0005524
Dere06g1858 492 Pfam ATP synthase alpha/beta chain, C terminal domain 348 472 IPR000793 GO:0015986
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1858 Dere-ChrDere06 33501066 33502647 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1858 51 347 Primary Pumps ATPases(2) AT4G38510 27.707 5.57e-27 112