Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1840 ATGGATAAAAGTGGGTTCTCTTCTCGGCGCGATGCTTTTCCGGCCGGCCTCCGAGTTCTCGTCGTCGACGATGATTTAACGTGGCTGAGGATCCTTGAGAAGATGCTCAAGAAGTGTTCTTATGAAGTGACTACATGTTGTTTAGCAAGAGAGGCTCTAAACTTGCTTCGCGAAAGGAAAGATGGATATGACATTGTGATCAGCGATGTAAATATGCCTGACATGGATGGTTTTAAACTTCTCGAGCATGTTGGACTTGAGATGGATCTTCCTGTCATCATGATGTCTGTTGATGGAGAAACAAGGAGGGTGATGAAAGGTGTTCAGCATGGAGCATGTGATTATCTCCTCAAGCCTATAAGGATGAAAGAACTTCGAAATATATGGCAACATGTCTATAGAAAAAGGTTGCACGAGGAAAGAGAATTTGGATGTCCTGAGAGTTTTGAGGGCGTTCACCTAATGAGAAATGGAGATCAATTTGATGATGGGAACTTGTTCTCTTTAGAAGATATGACTTCAACGAAGAAAAGGAAAGACGCAGATAACAAAAATGATGACAGAGTATTTGGAGATCAATCTTCCACGAAGAAAGCCAGAGTAGTTTGGTCTGTAGATCTGCATCAGAAATTTGTTAAGGCTGTGAATCAAATTGGATTTGACAAAGTTGGACCCAAGAAAATACTTGATTTGATGAATGTTCCCTGGTTGACTCGCGATAACGTTGCTAGCCACTTGCAGAAATATCGGCTCTACTTGAGTAGGTTGCAAAAGGATGGAGATCGGAATTCTTCCTCGACTGGGATTCAGCGTTCAGATTTATTTTCAAAAGATGCTGCAGGAAGTTCCTGTTCTCAGAACCGAATGAACAGGCAACAAAATGATGTTTCAATTGACAGCTATAGATATTCAGAAGGAACGTTAAAACTTCAGAATGTGGATGCTAGAAGTCATGAAAGTGATTTAAAGGGAATCGCTTCAGAGGCTACGAAAGATGAAACAACAGATTTGACGGCTATCATTCAAGATACAAATATCAGAAGTTTACAGAAGGGCCACGATCAATCTTTTGCACCTCCAGAATCAGAAGGAAGCAGAGCGTTTGATTGTGCCACCCCAACACAGTACTCTTGGAGGGAATATCCAGAAATGCAACTCAAAAAACATAAGTCATTTATTCCATTAAAGGATAGCTTCAGCCAGTTGCCATTACATGGTAAGCTGCATCACGTCCAGGCTGATCAATCACAAGTAAATTCTTCAATAAGTTCCAACCCCTCTGCAATGGAGGGAGAAACTACTGCCTGTATTGAAGTCAAGCCTTCGTATGCTGATTATGCCGGTTCATTGAGTTCATTAGAGAATGCAGATGCCTTTTCTATGCAGTCCAAGAGCTTTATGGTGAATGATCAATGTTTAGAACCCATTTCCACTTCGAATTTTGGGATGAAAACACAGGACTTTAATCGCAATAGTATTTCTGACCTAGAATTTCACCAACAAAACCTACTTTTGGGAGGTGAGGTAGCTTCTGCACCTTTGGAGGGGGACTTAAAATCCTTTTGGCTACCAGATGGGTGCTATAATATGAACTTTGGACTTCAGAATATAGAGATGCCAGAGTATTATGATCCAGGGCTCATGGGGGAAGTTCCAACTTATTTATATGATACAGCAGATTATTCAGCAGTAGATCAAGGCCTATTCATAGCATGA 1716 0.4108 MDKSGFSSRRDAFPAGLRVLVVDDDLTWLRILEKMLKKCSYEVTTCCLAREALNLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETRRVMKGVQHGACDYLLKPIRMKELRNIWQHVYRKRLHEEREFGCPESFEGVHLMRNGDQFDDGNLFSLEDMTSTKKRKDADNKNDDRVFGDQSSTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRDNVASHLQKYRLYLSRLQKDGDRNSSSTGIQRSDLFSKDAAGSSCSQNRMNRQQNDVSIDSYRYSEGTLKLQNVDARSHESDLKGIASEATKDETTDLTAIIQDTNIRSLQKGHDQSFAPPESEGSRAFDCATPTQYSWREYPEMQLKKHKSFIPLKDSFSQLPLHGKLHHVQADQSQVNSSISSNPSAMEGETTACIEVKPSYADYAGSLSSLENADAFSMQSKSFMVNDQCLEPISTSNFGMKTQDFNRNSISDLEFHQQNLLLGGEVASAPLEGDLKSFWLPDGCYNMNFGLQNIEMPEYYDPGLMGEVPTYLYDTADYSAVDQGLFIA 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1840 571 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
Dere06g1840 571 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Dere06g1840 571 FunFam Two-component response regulator 194 257 - -
Dere06g1840 571 SMART REC_2 17 129 IPR001789 GO:0000160
Dere06g1840 571 CDD REC_typeB_ARR-like 19 133 - -
Dere06g1840 571 SUPERFAMILY Homeodomain-like 196 255 IPR009057 -
Dere06g1840 571 Gene3D - 17 160 - -
Dere06g1840 571 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 318 IPR045279 GO:0009736
Dere06g1840 571 PIRSF RR_ARR_type-B 1 514 IPR017053 GO:0003677|GO:0003700|GO:0009736
Dere06g1840 571 Pfam Myb-like DNA-binding domain 200 250 IPR001005 -
Dere06g1840 571 MobiDBLite consensus disorder prediction 277 297 - -
Dere06g1840 571 NCBIfam myb-like DNA-binding domain, SHAQKYF class 198 251 IPR006447 GO:0003677
Dere06g1840 571 SUPERFAMILY CheY-like 16 140 IPR011006 -
Dere06g1840 571 Gene3D - 194 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1840 Dere-ChrDere06 33274681 33278570 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1840 11 256 Response Regulator Gene Family AT2G25180 56.349 3.66e-83 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Dere06g1840 Response_reg 1.7e-23 CL0304