Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1827 ATGTATATATCAGAAAAACCCCGACCCATCGATTTCTACAAAGAACAAGCAACCCCAGATGTCATGATCGAGGTTGTATCCAATGCCGAACTTCCTCCGCCGCCGCCGCCGCCGCCACTCCAACAATCTCAGCAGCATCAAATGATCCTCGGCGACAGTAGTGGGGAGGACCACGAGGTTGAAATTAAGGCACCAAAGAAGCGCGCCGAGACTTGGATACAAGACGAGACGCGAAGTCTCATTGCTTTTCGCCGTGAGATGGATGGGCTCTTTAATACTTCAAAATCTAATAAGCACTTATGGGAACAGATATCAGCGAAGATGAGAGAGAAGGGATTCGATCGATCGCCGACTATGTGTACGGATAAGTGGAGAAATTTGTTGAAGGAGTTCAAGAAGGCGAAGCATCTAGATAGGGGGGCTGGGTCCGCTAAGATGTCGTATTACAAGGACATTGAGGAGATTTTGAAAGAGAAGAGCAAGAGTGTGTACTACAAGAGCCCAACTCCTCCAAAGGTTGATTCCTATATGCAGTTCGCCGATAAAGGTATGGAGGATACCGGCATCACTTTTGGGCCTGTTGAAGCTACTGGCAGATCAACACTGAATCTTGATAATCGTTTGGATCATGATGAACATCCTCTTGCTATTACCACAGCTGATACTGTTGCAGCAAGTGGAGTTCCTCCTTGGAATTGGAGAGAAGCTCCTATAAATGGTGGGGAAGGTCAGTCATGTTGTGGGAGGGTAATATCAGTCAAATGGGGCGATTATACAAGAAGAATAGGTATTGATGGTACTCCAGAAGCCATCAAGGAAGCAATAAGGGCTGCTTTTAGGTTGAGAACCAAACGTTTATTTTGGTTGGAGGATGAAGACCAGATAATCAGGAGTCTTGACCGAGACATGCCTTTAGGAAATTATACTCTTCACCTTGATGAAGGAATGGCCATTAAAGTATGCCTCTACGATGAGTCTGACAATATCCCTGTCCATACTGAAGACAAGATCTTTTACACTGAAGATGATCACCGCGATTTTCTGGCACGCCGGGGTTGGACATGCCTTCGTGAATTTGATGGATATAGAAATATTGATAACTTGGATGATCTTCAACCTGGTGCCATATACCGTGGAGTGAGTTGA 1146 0.4546 MYISEKPRPIDFYKEQATPDVMIEVVSNAELPPPPPPPPLQQSQQHQMILGDSSGEDHEVEIKAPKKRAETWIQDETRSLIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHLDRGAGSAKMSYYKDIEEILKEKSKSVYYKSPTPPKVDSYMQFADKGMEDTGITFGPVEATGRSTLNLDNRLDHDEHPLAITTADTVAASGVPPWNWREAPINGGEGQSCCGRVISVKWGDYTRRIGIDGTPEAIKEAIRAAFRLRTKRLFWLEDEDQIIRSLDRDMPLGNYTLHLDEGMAIKVCLYDESDNIPVHTEDKIFYTEDDHRDFLARRGWTCLREFDGYRNIDNLDDLQPGAIYRGVS 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1827 381 ProSiteProfiles Myb-like domain profile. 64 128 IPR001005 -
Dere06g1827 381 Pfam Myb/SANT-like DNA-binding domain 71 155 IPR044822 -
Dere06g1827 381 CDD GT1 70 135 - -
Dere06g1827 381 Gene3D - 72 134 - -
Dere06g1827 381 MobiDBLite consensus disorder prediction 27 56 - -
Dere06g1827 381 FunFam trihelix transcription factor GT-1 72 134 - -
Dere06g1827 381 SMART sant 68 130 IPR001005 -
Dere06g1827 381 PANTHER FI21293P1 43 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1827 Dere-ChrDere06 33116809 33122267 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1827 20 380 Trihelix Transcription Factor Family AT3G25990 68.011 0.0 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Dere06g1827 Myb_DNA-bind_4 1.1e-19 CL0123