Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1809 ATGATGGATGTTGCCGAGGTTGAAGAAAATCTGTTTGCAGTAAGCGATGCCAAGTTACATGGAGAAATGTGCAAGGCTCTTTCAGCAACATATTGCAAAGTATTGTCAATATTTCCATCTTTGGAAGCAGCTAGGCCTCGGAGCAAATCTGGAATTCAGGCATTATGTTCATTGCATGTGGCATTAGAGAAAACCAAGAATGTTCTTCAGCATTGCTCAGAATGTAGTAAGCTTTATTTGGCTATAACTGGGGATTCTGTTCTTCTAAAATTTGAGAAAGCTAAATGTGCTCTAGAAAGTAGTCTTAAACGGGTGGAGAATATTGTTCTGCAATCAATTGGGTGTCAGATTCAAGAGATTGTGCATGAACTTGAAAGTATGGAATTTGCACTTGACCCATCAGAAAAGCAAGTTGGAGATGATTTGATTGCTTTGCTTCAGCAAGGGAGAAAGTTTAACAACTCTAATGACAGTAGTGAGCTTGAATGTTTTCACCAGGCTGCCACTAGACTTGGGATCACATCTTCTAGAGCGGCTCTTACTGAAAGAAGAGCTCTCAAGAAACATATAGAAAGAGCTCGGGCTGAAGAAGACAAGCGGAAGGAATCAATTGTAGCATATCTTTTACACCTTATGAGGAAATACTCCAAGTTATTTAGAAGTGAGTTTTCAGACGATAATGATTCTCAGGGTTCTGCACCTTGTTCTCCCACTGTTCATGGCTCTGTCGAGGATGGTATTGCTGGTGGTAATTACCAGGCGTTTGATAGACAGATTTCAAAACTTAGTTCTTTTAATTTTAAGCCAACTAATAGGAAATCAGGGCAAATGCCCCTCCCACCTGAAGAGTTAAGGTGCCCTATATCTCTGCAACTTATGTATGATCCTGTCATAATTGCTTCTGGGCAAACTTATGAGAGGGTCTGCATAGAGAAATGGTTCTCTGATGGGCACAACACTTGCCCAAAGACTCAACAGACACTTGCACATCTATCGTTGACTCCTAATTACTGTGTTAAGGGTCTTGTTGCTTGTTGGTGTGAACATAATGGAGTTCCTGTTCCTGATGGTCCTCCTGAATCTCTTGACCTTAACTATTGGAGATTGGCATTATCTGAGTCTGAGTCAACAAATTCTAGATCTGCAAACAGTGTCAACTCTTGCAAATTGAAGGGTGTCAAAGTGGTTCCTATAGAAGAGAGTGGTGTCTCACAGGAAAGTGGAGAAAATGGAACTGAAAGTGTGTCTGCACAAGAGGAAGATACTGAGCAGTATCTTAGTTTTCTGAAAGTTATGACTGATGGGAACAGTTGGAAGAGGAAATGTAAAGTGGTAGAGCGGTTAAGGTTGTTGCTGAGGGATGATGAAGAAGTCAGGATTTTTATGGGGGCCAATGGGTTTGTTGAAGCACTATTGCAGTTTCTGCATTCAGCAGTTTGTGAGGGCAATGTGATGGCTCAGGAAAGTGGAGCAATGGCTCTCTTTAACCTTGCTGTGGATAACAACAGAAATAAGGAAACTATGTTAGCAGCAGGAGTACTATCATTGCTGGAGGAAATGATTTCTAGTTCCAAATCTTATGGCTGTGTAACGGCCCTATATTTAAATCTCTCTTGCCTTGAAGAAGCCAAGCATATGATTGGCATGAGTCAGGCTGTTCAGTTCCTCATCCAGCTTCTCCTTCAACCTAACATTGAAGTCCAGTGCAAGCAAGATTCCCTTCATGCGCTCTATAATCTATCTACTATCCCCTCCAATATTCCAAACCTCCTTTCATCTGGCATCGTCAGTGGCCTTCAATCCCTCCTTGCAGGCCAGGGTGATTGCATGTGGACAGAAAAATGCATTGCTGTTATGTTTAATTTAGCTGCTTCACAGTTGGGAAGGGAGGAAATGATATCATCTCCGGGGCTCATAGGTGCATTGGCTACCATATTGGACACTGGTGAGCCCCTAGAGCAAGAGCAAGCTGTCTCTTGTCTCTTGATTTTATGTCACGGCAATGAAATATGTAGCCAACTGGTCCTGCAAGAAGGGGTAATACCTGCATTGGTGTCATTATCAGTGAATGGGACCTCAAGAGGAAGAGAGAAAGCTCAGAAACTCTTGATGCTGTTCCGAGAGCAGCGACAGCGAGACCATTCCCCTCCTAAGACACACCAGTTCCCGCCTGAAACTAGTGATATATCTATGCCGCCTCCAGAAACGAAACCGCTATGTAAGTCGATGTCTAGAAAAAAAATGGGTAGAGCTCTTAGCTTTTTATGGAAAAGCAAGAGCTATTCCGTTTACCAGTGTTAA 2301 0.425 MMDVAEVEENLFAVSDAKLHGEMCKALSATYCKVLSIFPSLEAARPRSKSGIQALCSLHVALEKTKNVLQHCSECSKLYLAITGDSVLLKFEKAKCALESSLKRVENIVLQSIGCQIQEIVHELESMEFALDPSEKQVGDDLIALLQQGRKFNNSNDSSELECFHQAATRLGITSSRAALTERRALKKHIERARAEEDKRKESIVAYLLHLMRKYSKLFRSEFSDDNDSQGSAPCSPTVHGSVEDGIAGGNYQAFDRQISKLSSFNFKPTNRKSGQMPLPPEELRCPISLQLMYDPVIIASGQTYERVCIEKWFSDGHNTCPKTQQTLAHLSLTPNYCVKGLVACWCEHNGVPVPDGPPESLDLNYWRLALSESESTNSRSANSVNSCKLKGVKVVPIEESGVSQESGENGTESVSAQEEDTEQYLSFLKVMTDGNSWKRKCKVVERLRLLLRDDEEVRIFMGANGFVEALLQFLHSAVCEGNVMAQESGAMALFNLAVDNNRNKETMLAAGVLSLLEEMISSSKSYGCVTALYLNLSCLEEAKHMIGMSQAVQFLIQLLLQPNIEVQCKQDSLHALYNLSTIPSNIPNLLSSGIVSGLQSLLAGQGDCMWTEKCIAVMFNLAASQLGREEMISSPGLIGALATILDTGEPLEQEQAVSCLLILCHGNEICSQLVLQEGVIPALVSLSVNGTSRGREKAQKLLMLFREQRQRDHSPPKTHQFPPETSDISMPPPETKPLCKSMSRKKMGRALSFLWKSKSYSVYQC 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1809 766 PANTHER U BOX DOMAIN-CONTAINING 24 710 - -
Dere06g1809 766 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 353 IPR013083 -
Dere06g1809 766 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Dere06g1809 766 Gene3D - 425 625 IPR011989 -
Dere06g1809 766 SMART arm_5 540 582 IPR000225 GO:0005515
Dere06g1809 766 SMART arm_5 455 499 IPR000225 GO:0005515
Dere06g1809 766 FunFam RING-type E3 ubiquitin transferase 279 353 - -
Dere06g1809 766 Pfam U-box domain 281 350 IPR003613 GO:0004842|GO:0016567
Dere06g1809 766 SUPERFAMILY ARM repeat 428 708 IPR016024 -
Dere06g1809 766 Coils Coil 176 196 - -
Dere06g1809 766 MobiDBLite consensus disorder prediction 708 742 - -
Dere06g1809 766 Gene3D - 626 705 IPR011989 -
Dere06g1809 766 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Dere06g1809 766 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 466 512 IPR000225 GO:0005515
Dere06g1809 766 SUPERFAMILY RING/U-box 278 356 - -
Dere06g1809 766 CDD RING-Ubox_PUB 281 333 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1809 Dere-ChrDere06 32969907 32973757 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1809 2 765 U-box Gene Family AT1G24330 67.137 0.0 1041