Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1785 ATGAGCAAGAAGAGAAAGTTTGTTGCCGATGGAGTTTTCTTCGCCGAGCTGAACGAGGTTTTGACCCGAGAGCTTGCCGAGGATGGATACTCTGGTGTTGAGGTTAGAGTTACTCCGATGCGCACTGAGATCATTATCAGAGCCACTCGAACCCAGAATGTACTTGGTGAGAAGGGGAGGAGAATTAGGGAGCTGACCTCCGTGGTACAGAAGAGATTTAAGTTTCCAGAGAATAGCGTGGAGCTATATGCTGAGAAGGTCAACAACAGGGGTCTTTGTGCTATTGCCCAGGCCGAGTCTCTTCGCTACAAGCTTCTTGGTGGTCTCGCTGTACGGAGGGCATGCTATGGTGTTTTAAGATTTGTTATGGAAAGTGGGGCAAAGGGATGTGAGGTAATTGTAAGTGGAAAATTGAGGGCTCAGCGAGCTAAATCCATGAAGTTCAAGGATGGGTACATGATTTCTTCTGGTCAGCCAGTCAAAGATTATATTGATTCTGCTGTAAGACATGTACTCCTCAGACAGGGTGTTCTTGGTATCAAGGTCAAGATCATGCTTGATTGGGACCCTAAGGGGAAGCAAGGTCCTAAAACTCCCCTTCCTGATATTGTCACAATCCACCCTCCAAAGGAGGAGGAAGAACACTTCCGGCCTGCTGCTATCATGGCGACTGATATTGATGTCCCTGTGGCTGTGGCTTGA 702 0.4786 MSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHPPKEEEEHFRPAAIMATDIDVPVAVA 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1785 233 Pfam KH domain 16 89 IPR004044 GO:0003723
Dere06g1785 233 NCBIfam 30S ribosomal protein S3 4 206 IPR005703 GO:0003735|GO:0006412|GO:0015935
Dere06g1785 233 ProSiteProfiles Type-2 KH domain profile. 17 88 IPR004044 GO:0003723
Dere06g1785 233 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 6 95 IPR009019 GO:0003723
Dere06g1785 233 CDD KH-II_40S_S3 1 91 - -
Dere06g1785 233 SUPERFAMILY Ribosomal protein S3 C-terminal domain 89 187 IPR036419 -
Dere06g1785 233 Pfam Ribosomal protein S3, C-terminal domain 102 184 IPR001351 GO:0003735|GO:0006412
Dere06g1785 233 Gene3D - 89 215 IPR036419 -
Dere06g1785 233 ProSitePatterns Ribosomal protein S3 signature. 143 179 IPR018280 -
Dere06g1785 233 Gene3D - 1 88 IPR015946 -
Dere06g1785 233 FunFam 40S ribosomal protein S3 89 224 - -
Dere06g1785 233 FunFam 40S ribosomal protein S3 1 88 - -
Dere06g1785 233 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 3 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1785 Dere-ChrDere06 32743512 32745365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1785 1 231 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 86.580 2.16e-149 414