Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1784 ATGCCCGAATCCGATTTTGAGACCCGGATTGGATCACTCCCTCCAAAATCTCTCTCTGGAATTTACTATTTGTGTTACTCATTTCGGATCAAATTCGAACCACCTCCTCTGCGGAAATTCCTCATCATCTTCTCAGTTCGCAAGGCACATCGGGTTTCCGTTCGAGTGCTCGGGGATCGGAGTATGCCGGTGAATCTCACGTCGAACGCGATCGCGGCGATAGTCGCCGGCGACGTCAACTCGAAGCCCCTTGTCCAGGTCCTGGACATCAAGTTGATTTCGAACAACACGCAGCAGGAGAGGTACCGGCTTCTGCTTTCCGATTCCGTGTCCGCTCAGCACGCTATGCTCGCGACTCAGCTCAATGACCGAGTTAGAACCGGACGAGTAAAGAAAGGTTCCGTCGTTCAGCTGATTGAGTACATTTGCAGTCTTATTCAGAACCGCAAAATTATTGTAGTGCTCAACATGGAAACTATAATTCCAGATTGTGAGATTATTGGGAATCCAAAGTCATTTGCGGAATCTGATTTAACAAGTCAGAAAGAATTGCCTGATAACAATATGCAGAACTCATCCAGGTTTAATAATAATCGTTTGGCTGCTCAAAATTCAAGTCATGATGTGCAGAATTTCAGGCCAACTGTTCAACCTCCATTCCGACCACCTCCAGTTTACAAAAGCCATGGTGCAATTATGAAGAATGAAGCACCTGCACGCATCATTCCCATTGCTGCTTTAAATCCTTATCAGGGTCGGTGGGCTATCAAGGCACGGGTAACTGCAAAAGGGGATCTCCGCCGCTATAATAATGCTCGTGGAGATGGGAAAGTTTTCTCTTTTGACCTCCTTGATTCTGATGGAGGGGAAATAAGAGTAACTTGCTTCAATGCTGTTGTTGATCGCTTTTATGATGCAATTGAGGTTGGTAAAGTTTACTTGATATCTAAAGGTAGCTTAAAACCTGCACAGAAGAACTTCAATCATTTGAAGAATGACTGGGAAATTCTTTTGGACTCAAACTCAACTGTGGATCTTTGCCCCGATGAAGATGGTTCTATACCTAGACAGCAGTTCTCCTTTAGGCCTATCAGTGATATTGAGAACGTTGATAGTAACTCTATACTTGATGTTATTGGGGTAGTGACATGTGTGAATCCCTCAGTTCCCATCTTGAGGAAGAATGGAATGGAAACTCAGAGACGCATTTTGAATGTAAAGGACATGTCTGGCAGGAGTGTTGAGCTCACCCTTTGGGGTGATTTCTGCAATAGGGAAGGTCAAAAGCTGCAAGAGATGGTTGATGGTGGGGTTTTCCCAGTTTTGGCAGTCAAAGCCGGGAAGGTTAACGACTTTAGCGGAAAATCTATAGGAACCATTTCTGCTACACAACTCTTCATTAACCCAGATTTTCCTGAGGCGCATAGATTAAGAGACTGGTTTGATCGAGGGGGAAAAGATTTTGCTTCTGTGTCCATTTCTAAGGACGTTATGCCTGGAGGACCCAAGAACGAGATCCGTAAAACTGTGTCTCAGATCAAGGATGAAGGCCTGGGACGATCAGATAAACCAGAGTGGATAACGGTGAGAGCAACTATATCTTTCATCAAGACAGATACATTTTGTTACCCAGCTTGCCCTCTGATGATTGGAGATCGACAGTGCTGTAAAAAAGTGACTAGGTCTGGAAGCACTAGATGGCAATGCGATAGATGCAATCAAGATTTTGAGGAGTGTGATTACCGTTACCTTCTTCAAGCCCAAATTCTGGATCATACAGGAATAACTTGGGTCACCGCATTCCAAGAATCAGGGGAAGAGATTTTGGGTTGCTCAGCAAAGGAGCTGTACTTATTGAAGTATGAAGAGCAAGATGATGAGAAGTTTGGGGACATAGTTCGTAGTAGACTCTTCAACCAGTTTGTGTTTCGGTTGAAAATTAAGGAGGAATTGTATGGCGATGAACAGAGAGTGAAAATTACAGTAGTTAAGGCAGATAAGGTGAATTATTCTTCAGAGAGTAGATACATGCTTGATTTGATTTCAAAATTTTGTAAGCAATAA 2064 0.4365 MPESDFETRIGSLPPKSLSGIYYLCYSFRIKFEPPPLRKFLIIFSVRKAHRVSVRVLGDRSMPVNLTSNAIAAIVAGDVNSKPLVQVLDIKLISNNTQQERYRLLLSDSVSAQHAMLATQLNDRVRTGRVKKGSVVQLIEYICSLIQNRKIIVVLNMETIIPDCEIIGNPKSFAESDLTSQKELPDNNMQNSSRFNNNRLAAQNSSHDVQNFRPTVQPPFRPPPVYKSHGAIMKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYDAIEVGKVYLISKGSLKPAQKNFNHLKNDWEILLDSNSTVDLCPDEDGSIPRQQFSFRPISDIENVDSNSILDVIGVVTCVNPSVPILRKNGMETQRRILNVKDMSGRSVELTLWGDFCNREGQKLQEMVDGGVFPVLAVKAGKVNDFSGKSIGTISATQLFINPDFPEAHRLRDWFDRGGKDFASVSISKDVMPGGPKNEIRKTVSQIKDEGLGRSDKPEWITVRATISFIKTDTFCYPACPLMIGDRQCCKKVTRSGSTRWQCDRCNQDFEECDYRYLLQAQILDHTGITWVTAFQESGEEILGCSAKELYLLKYEEQDDEKFGDIVRSRLFNQFVFRLKIKEELYGDEQRVKITVVKADKVNYSSESRYMLDLISKFCKQ 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1784 687 CDD RPA1_DBD_C 510 683 IPR047192 -
Dere06g1784 687 FunFam Replication protein A subunit 492 684 - -
Dere06g1784 687 Gene3D - 353 492 IPR012340 -
Dere06g1784 687 SUPERFAMILY Nucleic acid-binding proteins 507 684 IPR012340 -
Dere06g1784 687 Pfam OB-fold nucleic acid binding domain 255 328 IPR004365 GO:0003676
Dere06g1784 687 CDD RPA1_DBD_B 375 482 - -
Dere06g1784 687 FunFam Replication protein A subunit 240 349 - -
Dere06g1784 687 PANTHER REPLICATION FACTOR A 1, RFA1 254 661 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Dere06g1784 687 FunFam Replication protein A subunit 65 174 - -
Dere06g1784 687 SUPERFAMILY Nucleic acid-binding proteins 240 353 IPR012340 -
Dere06g1784 687 Gene3D - 64 174 IPR012340 -
Dere06g1784 687 SUPERFAMILY Nucleic acid-binding proteins 62 169 IPR012340 -
Dere06g1784 687 Pfam Replication factor-A protein 1, N-terminal domain 66 160 IPR007199 GO:0003677|GO:0005634|GO:0006260
Dere06g1784 687 Gene3D - 240 350 IPR012340 -
Dere06g1784 687 SUPERFAMILY Nucleic acid-binding proteins 358 486 IPR012340 -
Dere06g1784 687 FunFam Replication protein A subunit 353 491 - -
Dere06g1784 687 CDD RPA1N 70 161 IPR007199 GO:0003677|GO:0005634|GO:0006260
Dere06g1784 687 Pfam Replication protein A OB domain 364 468 IPR031657 -
Dere06g1784 687 Gene3D - 493 685 IPR012340 -
Dere06g1784 687 Pfam Replication factor-A C terminal domain 526 676 IPR013955 -
Dere06g1784 687 NCBIfam replication factor-a protein 1 (rpa1) 65 683 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Dere06g1784 687 CDD RPA1_DBD_A 243 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1784 Dere-ChrDere06 32728046 32731187 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1784 87 681 Core DNA Replication Machinery Family AT2G06510 71.452 0.0 916