Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1781 ATGGGTGATGTCCCAAATCCTCACCCAGTCTCGCCGCCACCACCACCACCACCACTACCAAATATAGACATGAAATCAAACATGCCCATGGTGTACTATGGCCTAGTAGTTGTAGGAACAGCAGCCATAGTTTTAGCAGTGTACAACCTTATCATCGTCAGAAGGAATCGCAGCCAGTCATCCACTTCTTCATCGTCATCATCACAACCCCCAAATCGGTTGATTGAAGCCGTCGCCCCCAGTAGGAGTTCTGAGATTAGCTTAAACAGAAACTTGCTATCAAGCTTCAAGTACAAGAAAGAAGCAGAAGGAGATGGAGATGGTGAATGCCCAGTTTGCCTTTCGAGGTTTGAAGAGGGAGAAGAAGTGAGGAAGTTACCGAGGTGCAAACACTGGTTTCATGCAGGGTGCATAGACATGTGGCTTTACTCTCACTTCGATTGCCCGATTTGTCGAACACCTGTCGTGCACTTTTGTCCCCGTTTTCCGCCGTCGGAGAATTCGAATTTCGGCGAAGGCTTGCCCCAATCCGCCATTAATGGCGTCGCAGTTTGA 555 0.4865 MGDVPNPHPVSPPPPPPPLPNIDMKSNMPMVYYGLVVVGTAAIVLAVYNLIIVRRNRSQSSTSSSSSSQPPNRLIEAVAPSRSSEISLNRNLLSSFKYKKEAEGDGDGECPVCLSRFEEGEEVRKLPRCKHWFHAGCIDMWLYSHFDCPICRTPVVHFCPRFPPSENSNFGEGLPQSAINGVAV 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1781 184 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 27 156 IPR044675 -
Dere06g1781 184 Pfam Ring finger domain 109 152 IPR001841 -
Dere06g1781 184 MobiDBLite consensus disorder prediction 1 20 - -
Dere06g1781 184 FunFam RING-H2 finger protein ATL1 72 157 - -
Dere06g1781 184 CDD RING-H2_EL5-like 109 152 - -
Dere06g1781 184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 158 IPR013083 -
Dere06g1781 184 SMART ring_2 110 151 IPR001841 -
Dere06g1781 184 SUPERFAMILY RING/U-box 102 164 - -
Dere06g1781 184 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1781 Dere-ChrDere06 32705476 32706030 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1781 35 156 C3H Transcription Factor Family AT5G17600 35.938 5.79e-20 84.0