LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere06g1778	ATGCAACGTGGGTGTTTGGGCCACAAATATGGATCTGCAGATGGGCCAATGAATGAATGGGCCGTGCCCAAGCACACTAATAGTTTGGCAACTTCCCCACCAGAATCCTCCATCATCTCCGAGCAGATGTTACAATTGGCAAAGGTTGACGAACTTGATTGTGAAGCGGAAATGCTTACGTGCATTGCTCGTCCGAAGAAACTCGGGCATGAGTCACTGAGTCAGCCCGAGGAATCCGATTCTACCAACCCAAACGCCGCCAAAAGTCAAGCTACCAAATCCCTTACTTCTCAGCTCAAGGATATGGCGTTGAAGGCATCCGGAGCTTACAAGCATTGTAGTCCCTGCACCGGACCACCGACACAGGATCGACTCAGGGGCAATACTGAGTCAGACGCAGAGTCGGACCGGTTCCGATGGTCGTACCGGCGAACGGGCAGCTCAAGCACGACGAGAACATGGGGGAAGGAGATGGAAGCGAGGCTAAAGGGAATTTCGAGTGGGGAGGGGACGCCCAACTCCGCCAGTGGACGGCGGGTGGAGCAGGTGGTGCTGTTCGTGGAAGAGAACGAACCTAAGGAGTGGGTGGCGCAGGTGGAGCCCGGCGTATTAATCACCTTTGTTTCGCTTCCTAGCGGAGGAAATGATCTGAAACGGATACGGTTCAGTCGGGAAATGTTTAACAAATGGCAAGCGCAAAGATGGTGGGCAGAGAACTATGATAGGGTCATGGAACTTTACAATGTTCAAAAGCTTAATCGCCAAGCTTGTCCCCTTCCAACACCGCCAAGATCTGAAGATGAGAGCTCAAAGCTTGAATCAGCAGAAGATAGCCCGGTAACACCGCCACTTACCAAAGAACGGTTGCCACGTAATTTGTATCGTCCAACAGGGATGGGAATGGGTTACTCATCGTCGGATTCTTTTGACCATCGCTCCATGCAATCCCGCCATTACTATGACTCGAATGGTCTCAACTCAACCCCAAAAGTCTCTACCATAAGCACAGCCAAGACAGAGACATCATCCATGGACGCATCTATCAGGAGTAGCTCATCCAGGGAGGCTGATCGCTCAGGGGATATATCAATCAGCAATGCCAGTGACCTTGACACTGAATGGGTTGAACAGGATGAACCTGGGGTTTACCTTACTATAAGAGCATTGCCAGGTGGCAAAAGGGAGCTGAGACGAGTCAGATTCAGCCGAGAAAGATTTGGGGAGATGCATGCTAGATTATGGTGGGAAGAGAATCGTGCCAGAGTACATGAACAATATTTGTGA	1284	0.5086	MQRGCLGHKYGSADGPMNEWAVPKHTNSLATSPPESSIISEQMLQLAKVDELDCEAEMLTCIARPKKLGHESLSQPEESDSTNPNAAKSQATKSLTSQLKDMALKASGAYKHCSPCTGPPTQDRLRGNTESDAESDRFRWSYRRTGSSSTTRTWGKEMEARLKGISSGEGTPNSASGRRVEQVVLFVEENEPKEWVAQVEPGVLITFVSLPSGGNDLKRIRFSREMFNKWQAQRWWAENYDRVMELYNVQKLNRQACPLPTPPRSEDESSKLESAEDSPVTPPLTKERLPRNLYRPTGMGMGYSSSDSFDHRSMQSRHYYDSNGLNSTPKVSTISTAKTETSSMDASIRSSSSREADRSGDISISNASDLDTEWVEQDEPGVYLTIRALPGGKRELRRVRFSRERFGEMHARLWWEENRARVHEQYL	427

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere06g1778	427	MobiDBLite	consensus disorder prediction	69	95	-	-
	Dere06g1778	427	MobiDBLite	consensus disorder prediction	1	36	-	-
	Dere06g1778	427	PANTHER	PROTEIN BREVIS RADIX-LIKE 1	58	427	IPR044532	-
	Dere06g1778	427	MobiDBLite	consensus disorder prediction	75	95	-	-
	Dere06g1778	427	MobiDBLite	consensus disorder prediction	335	350	-	-
	Dere06g1778	427	Pfam	Transcription factor BRX N-terminal domain	80	116	IPR027988	-
	Dere06g1778	427	ProSiteProfiles	BRX domain profile.	372	427	IPR013591	-
	Dere06g1778	427	Pfam	Transcription factor regulating root and shoot growth via Pin3	372	426	IPR013591	-
	Dere06g1778	427	Pfam	Transcription factor regulating root and shoot growth via Pin3	193	247	IPR013591	-
	Dere06g1778	427	MobiDBLite	consensus disorder prediction	255	308	-	-
	Dere06g1778	427	ProSiteProfiles	BRX domain profile.	193	248	IPR013591	-
	Dere06g1778	427	MobiDBLite	consensus disorder prediction	110	140	-	-
	Dere06g1778	427	MobiDBLite	consensus disorder prediction	335	364	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere06g1778	Dere-ChrDere06	32691865	32696759	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere06g1778	57	427	Major Intrinsic Protein MIP	AT1G31880	43.959	2.87e-92	281