Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1775 ATGTCAGGCTTACCCAATCAACTTCAAAAGCAAGGAAGGGACTGTAAGAAAGGCAAAGTAAAAGCTCCAACGAAAGGAGAAAATTCAAATTCTGTGAGAAAAATTCGAGTTTTGTACACTGACCCAGATGCTACGGATTATTCAAGCGAAGAAGATGGTGAATTTCTGAGCAATGGCTCTAAGCGAATTGTAAAGGAAATTTTGGTTCCAACCAAATCATGCAGCAAGTGGAAGCGGAAATCGTCGAGCTTGCAAAGAGGGGTACGACGTCGTAAATGGGGAAGCTACGTGGCGGAGATCCGAGACCCGTTTCGAGGGGTCCGAATATGGCTCGGCACTTACAGTACTGAGGAAGAGGCTGCTATGGTTTATGAGAAGAAGATGAAGGAATTTGAAAGCTTAGAGGCAGATTTGTTGTCCCATTCATCTCCATCGTCTGTGCTTGATGTCACTTCTGCTAGAGCTTCATTGCGTAATGGCATTGACGCTTCTGTGAAACAACAGGTGAATATGAACCAATATTCTGAAGAAGATGGGTCAATTCAGCATCTGTTAGAGGAGCCAATTGTGCCATCATTGGAGCATAGAGAAATGATTTTAGATGACATTGACGCTTCTGTGAAACAACACGTGAATATGGACCAATATTCTGAAGAAGAAGACGGGTCAATTCAGCATCTGTTAGAGGAGCCAATTGTGCAATCATTGGAGCATAGAGAAATGCTGTTTGGTGACGATGACTCTGATAAAGTCTTCAACAGTAATGACATTGATGGAGGTTCTGTCTGGGATGATGTGGAAAATGGTGAAGGAATAATCAGTGTTCCGCTTGTTGAAAGTGATTCTTGTGATCCAGAGTTAGCTTGGATTGATGAAGCTTTGAACGATGAATGGCCTTAG 900 0.4278 MSGLPNQLQKQGRDCKKGKVKAPTKGENSNSVRKIRVLYTDPDATDYSSEEDGEFLSNGSKRIVKEILVPTKSCSKWKRKSSSLQRGVRRRKWGSYVAEIRDPFRGVRIWLGTYSTEEEAAMVYEKKMKEFESLEADLLSHSSPSSVLDVTSARASLRNGIDASVKQQVNMNQYSEEDGSIQHLLEEPIVPSLEHREMILDDIDASVKQHVNMDQYSEEEDGSIQHLLEEPIVQSLEHREMLFGDDDSDKVFNSNDIDGGSVWDDVENGEGIISVPLVESDSCDPELAWIDEALNDEWP 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1775 299 Gene3D AP2/ERF domain 86 138 IPR036955 GO:0003700|GO:0006355
Dere06g1775 299 PRINTS Ethylene responsive element binding protein signature 107 123 IPR001471 GO:0003700|GO:0006355
Dere06g1775 299 PRINTS Ethylene responsive element binding protein signature 85 96 IPR001471 GO:0003700|GO:0006355
Dere06g1775 299 MobiDBLite consensus disorder prediction 1 31 - -
Dere06g1775 299 Pfam AP2 domain 86 132 IPR001471 GO:0003700|GO:0006355
Dere06g1775 299 CDD AP2 83 138 IPR001471 GO:0003700|GO:0006355
Dere06g1775 299 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 32 171 - -
Dere06g1775 299 ProSiteProfiles AP2/ERF domain profile. 84 142 IPR001471 GO:0003700|GO:0006355
Dere06g1775 299 SMART rav1_2 84 146 IPR001471 GO:0003700|GO:0006355
Dere06g1775 299 SUPERFAMILY DNA-binding domain 84 132 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1775 Dere-ChrDere06 32670005 32670904 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1775 61 192 AP2-EREBP Transcription Factor Family AT1G49120 34.810 1.56e-18 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere06g1775 AP2 4.4e-09 CL0081