Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1743 ATGGGAAGAGCACCATGCTGTGAGAAAGTGGGGTTGAAGAAAGGAAGATGGACAGTTGAAGAGGATAAGAAATTGACCCAATACATTCAACAACATGGTGAAGGTTCCTGGAGGAACTTGCCCAAGAATGCAGGATTGTTAAGGTGTGGAAAGAGTTGCAGACTGAGATGGATGAACTACTTGAGGGCAGATGTGAAGAGAGGAAACATCACTCCTCAAGAGGAAGAGATCATTGTCAAGTTGCATGCTGCTCTTGGGAATAGGTGGTCGATAATAGCAGGACATTTACCGGGACGAACTGATAATGAGATAAAGAACTATTGGAACTCTCATTTAAGGAGAAAAATATACTGCTTCATGAAATCTTTCAACGAATTTCTACCTTCCAGTCACATGCCTAGTGTAAATCACATAGCTGCTTCATCCAGACGAAGAGGTGGTCGAGTGAGACCAACTCAACCACCCATCAAACATGACAAACCCATTCCTTTGACCCAAAATTCCCACTCACAAGGTATCACAGGTAAGGTGTTTGAAAAAATGTCTAAACCAAACCCAACCCAACAAAGTTGTACCAATACACGATCTGAAGATGCTGCAATAATGGGTTCTTGTTCTTCGAGCCTACAGCCCCAAGATGAGGCAAGATGCCCAAGCATTGATAATGGAGGAGGAGGAGGAGGAAAATTTGAGACCTTGGGACCGTATCAGTGGCTAGACGATGAAATAATGCAGCTTAGCTACATGTTTGAAAGTGGGGCATTTGTTAACACAAGTGAGAATAATGTGGAACATGAAAATGATTCGATCTTGAGCAAAAATAATGACATGGTAGGGGGAGATTTATATGAATTGGTGGGAAAGGAAATAATGGGAGCAAATGAGGATCTCATGACCAGAAATAATAACATTGTGGAGGGTATTTTTGATTCATCAGAGAACTCTATCTATGATTATCAGTGGCTTGATTGGGATTTCGTGGATCGTGTTCAACCTTATGATAATCAATGGGGTCATTGTGAAGAAGAAAATCTGACCGTGACTTGTTTGTGGGGTGATGGCAATGGTGGAGAATTTGGGGGAAATATTTGTTCATAG 1098 0.4171 MGRAPCCEKVGLKKGRWTVEEDKKLTQYIQQHGEGSWRNLPKNAGLLRCGKSCRLRWMNYLRADVKRGNITPQEEEIIVKLHAALGNRWSIIAGHLPGRTDNEIKNYWNSHLRRKIYCFMKSFNEFLPSSHMPSVNHIAASSRRRGGRVRPTQPPIKHDKPIPLTQNSHSQGITGKVFEKMSKPNPTQQSCTNTRSEDAAIMGSCSSSLQPQDEARCPSIDNGGGGGGKFETLGPYQWLDDEIMQLSYMFESGAFVNTSENNVEHENDSILSKNNDMVGGDLYELVGKEIMGANEDLMTRNNNIVEGIFDSSENSIYDYQWLDWDFVDRVQPYDNQWGHCEEENLTVTCLWGDGNGGEFGGNICS 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1743 365 Gene3D - 11 67 - -
Dere06g1743 365 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dere06g1743 365 SMART sant 66 114 IPR001005 -
Dere06g1743 365 SMART sant 13 63 IPR001005 -
Dere06g1743 365 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Dere06g1743 365 CDD SANT 16 61 IPR001005 -
Dere06g1743 365 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 196 - -
Dere06g1743 365 FunFam Myb transcription factor 11 67 - -
Dere06g1743 365 Gene3D - 71 116 - -
Dere06g1743 365 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Dere06g1743 365 FunFam Myb transcription factor 71 116 - -
Dere06g1743 365 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dere06g1743 365 CDD SANT 71 112 IPR001005 -
Dere06g1743 365 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Dere06g1743 365 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dere06g1743 365 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Dere06g1743 365 MobiDBLite consensus disorder prediction 140 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1743 Dere-ChrDere06 32255373 32257674 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1743 1 276 MYB Transcription Factor Family AT5G49330 46.619 6.76e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere06g1743 Myb_DNA-binding 5.6e-14 CL0123