Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1740 ATGGTTTTCACAATCCTCTTGGGCCTCTCTTGTTTCGTTCTATGTCTCATGGCAGAAGCCACACGTTCTGAGTGGCAGTGGAAAGTGCCGTTGCTATATGCTGCGTGTGCTTTTGTTGGGTTAACAATTGCGATGATTGTAGAGCATGCTTATATGTTGACCGTGGTGAGTAAATCGTCGCCGAATTTACTTTCATGGGATCCTTATTCTGCTTCTGCAAGGTCCCTCACTTGGCAAGCTGGGTTTTTCTTCGTCACGACTTGCAGGGGAGATTGTGATACTAGGAGGGGTGAGTGTGGAATCAGGGCATCTCACGAACTGGTCAAAGCCCAGACCGAAGTGTGCGATGCTCCCAGAAGATCTTCGAAACAGTTCTCAGAGATGGTCGATCCGAGTGGAAAAGGATCGGAGGCTGAGGACGCCAATAACAGAAACCCAAACGGTGATTCATCAGAAGAGAGCCCAATGAACAACGAGCACAAGAAAACCTGCGCAGATTGTGGCACAACGAAAACCCCTCTCTGGAGAGGTGGTCCTGCTGGGCCCAAGTCTCTGTGCAACGCCTGTGGGATCAGAAGCAGAAAGAAGAAGAGAGCAATTCTGGGTATGAACAAGGGAAGTACGGAAGACAAAAAAGGCAAAAGAAGCAATAACAATAGTAAGATTGGGGATAGTTTGAAGCAGAGATTAATGGCTTTGGGAAGAGAGGTTTTGATGCAGAGATCAACGGTTGAGAGGCAGAGGAAGAAGCTTGGAGAGGAAGAACAAGCAGCTGTGTTGTTGATGGCTCTCTCTCATGGCTCCGTCTATGCTTAA 816 0.4804 MVFTILLGLSCFVLCLMAEATRSEWQWKVPLLYAACAFVGLTIAMIVEHAYMLTVVSKSSPNLLSWDPYSASARSLTWQAGFFFVTTCRGDCDTRRGECGIRASHELVKAQTEVCDAPRRSSKQFSEMVDPSGKGSEAEDANNRNPNGDSSEESPMNNEHKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKKRAILGMNKGSTEDKKGKRSNNNSKIGDSLKQRLMALGREVLMQRSTVERQRKKLGEEEQAAVLLMALSHGSVYA 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1740 271 Pfam GATA zinc finger 164 198 IPR000679 GO:0006355|GO:0043565
Dere06g1740 271 MobiDBLite consensus disorder prediction 202 218 - -
Dere06g1740 271 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 156 198 - -
Dere06g1740 271 MobiDBLite consensus disorder prediction 138 153 - -
Dere06g1740 271 CDD ZnF_GATA 163 221 IPR000679 GO:0006355|GO:0043565
Dere06g1740 271 Gene3D - 158 223 IPR013088 GO:0006355|GO:0008270
Dere06g1740 271 MobiDBLite consensus disorder prediction 119 165 - -
Dere06g1740 271 ProSiteProfiles GATA-type zinc finger domain profile. 158 194 IPR000679 GO:0006355|GO:0043565
Dere06g1740 271 SMART GATA_3 158 208 IPR000679 GO:0006355|GO:0043565
Dere06g1740 271 PANTHER OS01G0976800 PROTEIN 134 271 - -
Dere06g1740 271 ProSitePatterns GATA-type zinc finger domain. 164 189 IPR000679 GO:0006355|GO:0043565
Dere06g1740 271 MobiDBLite consensus disorder prediction 197 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1740 Dere-ChrDere06 32212390 32216556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1740 128 271 C2C2-Gata Transcription Factor Family AT3G06740 60.784 3.43e-52 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Dere06g1740 GATA 1.8e-16 CL0167