Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1735 ATGAATCTGAGCAACGGCATGGGATCTATATCAGCGACTGGCTCTAGTGCGACTTTGAAGTCCGGCGACATCGTCTCCGACCAGTTTCCGGCGGGTCTACGTGTGCTGGTAGTGGATGATGATCCCACGTGCCTCATGATACTCGAGAAGATGCTTCGCACTTGCCTCTACGAAGTTACGAAATGCAATCGAGCTGAGATTGCATTGTCACTATTAAGAGAGAACAAAAATGGGTTCGACATTGTTATAAGCGATGTACATATGCCAGACATGGATGGCTTCAAACTCTTAGAGCACATTGGGTTAGAGATGGACCTTCCTGTTATTATGATGTCCGCAGATGATGGGAAGAATGTTGTTATGAAAGGTGTGACTCATGGTGCTTGTGATTACCTTATAAAACCTGTGCGCATTGAGGCTTTGAGGAATATATGGCAACATGTAATTCGGAAGAGAAAGAATGAATGGAAGGATTTAGAGCAATCAGGTAGTGCTGAAGAAGGAGATCGACAACAAAAGCCAACTGATGAGGTAGATTACTCATCCTCTGCAAATGAAGGCAATTGGAGAAACACAAAGAAAAGGAGGGATGAGGAAGAAGAAGCAGAGGAGAGGGATGACTCATCGACATTAAAGAAGCCGCGAGTTGTGTGGTCAGTTGAGCTCCATCAACAATTTGTGGCTGCAGTGAATCAGCTAGGAATTGACAAGGCTGTTCCTAAAAAAATTCTGGAATTGATGAATGTTCCTGGGCTCACTAGAGAAAACGTTGCTAGCCACCTCCAGAAATATCGCTTGTATCTTCGAAGGCTGAGTGGTGTTTCTCAACACCAGAGTAACTTGAACAACTCTTTCATCAGCTCACAAGAGGCTAGTTTTGGGGCAATTCCTTCACTTAATGGAATTGATCTTCAAGCTCTTGCAGCTGCTGGCCAGCTTCCAGCACAAAGTCTGGTAACACTTCAAGCGGCAGGACTAGGTAGATCAACTGCAAAAGCTGGCATACCCATGCCCCTTGTTGATCAAAGGAACCTTTTCAGTTTTGAAAACCCAAGATTAAGATTTGGAGAAGGGCAACAGCAGCATCTGAGCTGTAGTAAACCAATGAACTTACTTCACGGTATCCCTACCAACATGGAGCCAAAGCAACTTGCTAATTTGCATCAATCTACTCAATCCCTGGGTAGCTTGAATATGCGAGTCAATACTTCTCCTGCACAGAGCAACCCCTTATTGATGCAGATGTCTCAATCACAACCAAGAGGTCATATGCTAAGTGAAAATACTGTGTCTCATGTTCCCAGACTTCCAACATCTATGGGGCAGTCTACAGTGCCAAATGGAACCCCCAGTGGTGTTCTGGGCAAAAATGGGATTGCTGATAATCATAGAGGAGCTGCATATAATCCAGTTCCCCAAACCTCTTCCATTATGAGTTTTCCCGTGAACCAAACCACAGAAATGTCCGCAAGCAGTTTTCCTCTTGGAAGCACTCCAGGTATATCAAGCATCACGTTAAAAGGAACATATCAAGATGGAGTTGCTTCTGGAATGAAAGGATCTTCTGGATTTGTTTCAAGTTATGATATCTTTAATGAACTGCACCAGCAGAAACCCCATGATTGGGAGATACAAAACTTGGGCCTGACTTATGATGCCTCTCAGCATGCAAATCCTTTACAAGGTAACGTTGATGTCTCACCATCAGTTTTTGTCCATCAGGGTTTCTCTTCCACCCAACAGACTGGACAGAATAGAGATGCTACTTCCATTGGAAAGGCCATGTTCTCCCTAGGGGAAGGCATGGAACCAGGTAATTTCCAAAATATCGGTCAACATCAGGGTTTCCAAAATACGCTTCTTGCTGATAATTCTGTAAGGGTTAAGACTGAAAGACTTCCCGATGCTAGCTCTCAGGCTAACCTCTTCCCTGAGCATTATGGGCAGGAGGATCTTATGAGTGCACTTCTTAAACAGCAAGAAGGCATTGGACCAACCGAGAATGAGTTTGACTTTGATGGATATTCCATGGACAACATTCCTGTCTAG 2049 0.4427 MNLSNGMGSISATGSSATLKSGDIVSDQFPAGLRVLVVDDDPTCLMILEKMLRTCLYEVTKCNRAEIALSLLRENKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKNVVMKGVTHGACDYLIKPVRIEALRNIWQHVIRKRKNEWKDLEQSGSAEEGDRQQKPTDEVDYSSSANEGNWRNTKKRRDEEEEAEERDDSSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQSNLNNSFISSQEASFGAIPSLNGIDLQALAAAGQLPAQSLVTLQAAGLGRSTAKAGIPMPLVDQRNLFSFENPRLRFGEGQQQHLSCSKPMNLLHGIPTNMEPKQLANLHQSTQSLGSLNMRVNTSPAQSNPLLMQMSQSQPRGHMLSENTVSHVPRLPTSMGQSTVPNGTPSGVLGKNGIADNHRGAAYNPVPQTSSIMSFPVNQTTEMSASSFPLGSTPGISSITLKGTYQDGVASGMKGSSGFVSSYDIFNELHQQKPHDWEIQNLGLTYDASQHANPLQGNVDVSPSVFVHQGFSSTQQTGQNRDATSIGKAMFSLGEGMEPGNFQNIGQHQGFQNTLLADNSVRVKTERLPDASSQANLFPEHYGQEDLMSALLKQQEGIGPTENEFDFDGYSMDNIPV 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1735 682 FunFam Two-component response regulator 209 272 - -
Dere06g1735 682 PIRSF RR_ARR_type-B 11 674 IPR017053 GO:0003677|GO:0003700|GO:0009736
Dere06g1735 682 ProSiteProfiles Response regulatory domain profile. 34 149 IPR001789 GO:0000160
Dere06g1735 682 MobiDBLite consensus disorder prediction 156 176 - -
Dere06g1735 682 Pfam Response regulator receiver domain 35 143 IPR001789 GO:0000160
Dere06g1735 682 SUPERFAMILY Homeodomain-like 210 270 IPR009057 -
Dere06g1735 682 NCBIfam myb-like DNA-binding domain, SHAQKYF class 213 266 IPR006447 GO:0003677
Dere06g1735 682 Gene3D - 33 169 - -
Dere06g1735 682 SMART REC_2 33 145 IPR001789 GO:0000160
Dere06g1735 682 SUPERFAMILY CheY-like 32 156 IPR011006 -
Dere06g1735 682 PANTHER TWO-COMPONENT RESPONSE REGULATOR 33 383 IPR045279 GO:0009736
Dere06g1735 682 Pfam Myb-like DNA-binding domain 215 265 IPR001005 -
Dere06g1735 682 CDD REC_typeB_ARR-like 35 149 - -
Dere06g1735 682 MobiDBLite consensus disorder prediction 189 210 - -
Dere06g1735 682 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 212 269 IPR017930 -
Dere06g1735 682 Gene3D - 210 272 - -
Dere06g1735 682 MobiDBLite consensus disorder prediction 156 210 - -
Dere06g1735 682 FunFam Two-component response regulator 33 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1735 Dere-ChrDere06 32166209 32169555 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1735 67 682 Response Regulator Gene Family AT3G16857 50.536 0.0 537
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Dere06g1735 Response_reg 7.7e-23 CL0304