Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1723 ATGGGTTCCGCGAATATCAGGGACATTTTGACTGCGTTTAGTCCTTCTTTAGACTTTTTTGCTATCAGCGCTGGAGATGGTCGCGTAAAGATATGGGATACACTAAATGGTCAGGTCCAGACTGAGTTTGCAGACATCACATCAAATGATGCAACAAGTATATATGCTACATCCATGAAGGGCCATCTTTCAATAGATTATACATGCATGAAGTGGCTGTCATTGGAAAGAAAGAGAAAAAGGAAACAGGCATCCTCATTGTTAGTACTTGGAACAGGCAGTGGTGATATTTTAGCACTTGATGTGTCTGCTGGTCAATTGAATTGGAGAATTAGTGACTGCCATCCTGGAGGCGTGAGAGCCATTTCATCTTCTGCAAATGGATCATGTATTTATACTGCAGGTGCAGATGGAGTGATTTGCAGGATTGATTGCATGACAGGAAACCTGTTGGAGAAATTCAAAGCTTCTACAAAGGCAATATCCTGTATGTCTGTTTCTGCAGATGGGAAGATATTAGCTACTGCAGCAGCACAATTGAAGATTTTTAATTGTCATGATCACAAGAAGATACAAAAGTTCTTTGGTCATCCTGGATCTGTACGGTGTTTAGTCTTCACTGAAGATGGAAAGTATATTTTATCCTCTGCTGTTGGTGAAAGATATGTTGCTGTCTGGAAGATAGATGGTGCTAAAAAGAAGTCAGTTAGTTGTGTTCTTGCAATGGAGCATCCTGCTGTTTTTCTTGATAGCAGGTGCCCTCCTAGCAGGGGACTTGATGAGGTTGGCGTATCTGTTTTGGCTATCTCAGAAGTTGGCGATTGTTATGTTTGGTTTGGAAATAGTATTGAGGAATTACATAGTGCAAAGCCCACTAGAATATCATTATCTTTGGAAGACATGTCCTCCAGAAATTACATGGGGGCATTGCCAGTGATATATGCTGCAAAATTACAAGGCCTTAACAAACCTACCTCTGGGCAGGTTTTACTTGTTCATGGGTTGCTTGTAAAACCATCATTTCAAAAAATTACAGTGCATTCTGGCTCAGACATAAAGTTGAACGTCTCCAATGTTGGTATTCTTCTCCCGAAGAACCAGTCTCTCATAAAGTCTAAAAAGGGGACAGATGTTAAAAAAGTTACTGCACTAGACCGTGCTAATGCAGAAGATGCCTTACTCCCAATTCCTAAGATTTTTGATTCTCATGTGAAAGAGAAAGCATTTCAAGACTCATTGGACAAGGAGGTTATGCAAGAACTGGTTAGAAGTAGTAAAGCTGTTTCTAATGAGATTGAAGATGAGACAATCCTGGGTGAAACTGATATGATTTGTATGGAGGACCAAGTGAGATCACTAGGGATACTTGCTGGTGAAAGTGATCTTGAATCAAATATCGAATTTTGTTCTACATTGTTGAAGGGTGTTGATCTTGAAGCTACTCTTCCAATGAAAAAGATAAGAGCAACTGTTTTGTCTATGAGGCCAGGTGAAGCATACAAGCTTCTGGAAGTGTTGCTGGCTGAATGGCAATCAAGGTCATCTATTGGAAAGCATGCTCTTCCGTGGATATATAGCATATTAGTGAATCATGGTCACTATGTCGTTTCTCAGGAACATGTGACACAGATGCCTGATTCCTTAAGCAAGATTACTAGTTTTAGAGGGTCTGCTCTTCAGACTTTGTTACAATTATCAGGTCGTCTGCAATTGGTGACAACACAGATTAACAAAGCTTCTCAAAATACAAGTCATTCAGTGCGAGATCTTCAAATGGAAGAAGGTGAAGATGAGGATGAACATGATTATTTTCAAGAGGAAGGAGACGAGGCATCTGAAATTAGTAGTGATGATGACAGCTAG 1863 0.4015 MGSANIRDILTAFSPSLDFFAISAGDGRVKIWDTLNGQVQTEFADITSNDATSIYATSMKGHLSIDYTCMKWLSLERKRKRKQASSLLVLGTGSGDILALDVSAGQLNWRISDCHPGGVRAISSSANGSCIYTAGADGVICRIDCMTGNLLEKFKASTKAISCMSVSADGKILATAAAQLKIFNCHDHKKIQKFFGHPGSVRCLVFTEDGKYILSSAVGERYVAVWKIDGAKKKSVSCVLAMEHPAVFLDSRCPPSRGLDEVGVSVLAISEVGDCYVWFGNSIEELHSAKPTRISLSLEDMSSRNYMGALPVIYAAKLQGLNKPTSGQVLLVHGLLVKPSFQKITVHSGSDIKLNVSNVGILLPKNQSLIKSKKGTDVKKVTALDRANAEDALLPIPKIFDSHVKEKAFQDSLDKEVMQELVRSSKAVSNEIEDETILGETDMICMEDQVRSLGILAGESDLESNIEFCSTLLKGVDLEATLPMKKIRATVLSMRPGEAYKLLEVLLAEWQSRSSIGKHALPWIYSILVNHGHYVVSQEHVTQMPDSLSKITSFRGSALQTLLQLSGRLQLVTTQINKASQNTSHSVRDLQMEEGEDEDEHDYFQEEGDEASEISSDDDS 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1723 620 SMART WD40_4 104 144 IPR001680 GO:0005515
Dere06g1723 620 SMART WD40_4 187 227 IPR001680 GO:0005515
Dere06g1723 620 SMART WD40_4 147 184 IPR001680 GO:0005515
Dere06g1723 620 SMART WD40_4 3 33 IPR001680 GO:0005515
Dere06g1723 620 Pfam WD domain, G-beta repeat 191 226 IPR001680 GO:0005515
Dere06g1723 620 Pfam WD domain, G-beta repeat 10 33 IPR001680 GO:0005515
Dere06g1723 620 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 12 230 IPR011047 -
Dere06g1723 620 MobiDBLite consensus disorder prediction 593 620 - -
Dere06g1723 620 Gene3D - 156 303 IPR015943 GO:0005515
Dere06g1723 620 ProSiteProfiles Trp-Asp (WD) repeats profile. 12 42 IPR001680 GO:0005515
Dere06g1723 620 PANTHER OS03G0300300 PROTEIN 4 619 - -
Dere06g1723 620 MobiDBLite consensus disorder prediction 580 620 - -
Dere06g1723 620 Pfam Dip2/Utp12 Family 483 573 IPR007148 -
Dere06g1723 620 Gene3D - 3 155 IPR015943 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1723 115 228 U-box Gene Family AT2G33340 27.966 6.93e-08 53.5