Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1715 ATGGTTTCGCTGAAGCTTCAGAAGCGGCTTGCAGCAAGCGTGCTCAAGTGCGGACGAGGGAAGGTCTGGCTCGATCCTAATGAGGTCAACGAGATATCCATGGCGAATTCCAGACAGAACATCAGAAAACTGGTGAATGATGGTTTCATCATTAGGAAGCCAACTAAGATTCATTCTCGATCCCGTGCACGTAGAATGAAGGAGGCCAAGAGAAAGGGTCGTCATTCTGGATATGGTAAGCGGAAGGGTACCAGGGAGGCAAGGCTGCCAACAAAACTGCTGTGGATGAGGAGAATGCGTGTGTTAAGGCGTTTGCTTCGCAAGTATCGTGAATCCAAGAAAATTGACAAGCACATGTACCATGACATGTACATGAAGGTGAAAGGTAATGTCTTCAAGAACAAGCGTGTTTTGATGGAGAGCATCCACAAGTCCAAAGCTGAAAAGGCTAGAGAGAAAACACTCTCAGACCAGTTTGAGGCTAAGCGAGCAAAGAGCAAGGCAAGCAGGGAGAGGAAGTTGGCCAGGAAAGAGGAGCGGTTGGCACAGGGACCTGGAGAGAGGGCACCCCCCGCTGCATCACAACCACAGTCTGAGGGAGCTAAGAAAATCAAGAAGTAA 621 0.4911 MVSLKLQKRLAASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVNDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKLLWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKSKASRERKLARKEERLAQGPGERAPPAASQPQSEGAKKIKK 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1715 206 MobiDBLite consensus disorder prediction 144 206 - -
Dere06g1715 206 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
Dere06g1715 206 Gene3D - 57 188 - -
Dere06g1715 206 FunFam Ribosomal protein L19 57 191 - -
Dere06g1715 206 MobiDBLite consensus disorder prediction 57 85 - -
Dere06g1715 206 MobiDBLite consensus disorder prediction 144 184 - -
Dere06g1715 206 CDD Ribosomal_L19e_E 4 167 IPR033935 GO:0003735|GO:0022625
Dere06g1715 206 SUPERFAMILY Ribosomal protein L19 (L19e) 3 144 IPR035970 GO:0003735|GO:0005840|GO:0006412
Dere06g1715 206 Pfam Ribosomal protein L19e 4 145 IPR000196 GO:0003735|GO:0005840|GO:0006412
Dere06g1715 206 Hamap 50S ribosomal protein L19e [rpl19e]. 3 149 IPR000196 GO:0003735|GO:0005840|GO:0006412
Dere06g1715 206 PANTHER 60S RIBOSOMAL PROTEIN L19 1 188 IPR039547 GO:0003723|GO:0003735|GO:0022625
Dere06g1715 206 SMART Ribosomal_L19e_2 3 146 IPR000196 GO:0003735|GO:0005840|GO:0006412
Dere06g1715 206 Gene3D - 2 56 IPR015972 GO:0003735|GO:0005840|GO:0006412
Dere06g1715 206 MobiDBLite consensus disorder prediction 57 79 - -
Dere06g1715 206 FunFam Ribosomal protein L19 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1715 Dere-ChrDere06 31853346 31855857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1715 1 203 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 84.390 5.82e-124 347