Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1688 ATGGTGTTTGGATGGGCTAGCAGAAGGAAGAAGAATAGGAAACCCAACTTGGAGCTTGTGATTCCAAACCATTTCAAATGTCCGGTTTCTCTTGATTTGATGAAAGACCCGGTCACTTTATCCACTGGGATCACGTACGATCGAGAGAGCATCGAACGGTGGTTTGAAGATGGGAATTTCACATGCCCTATGACCAACCAGATTCTCACGTCCTTCGATCTCATCCCAAATCACACGCTTAGGCTTATGATTCAGGATTGGTGCGTCGAGAATCGACAATTTGGGATCGAAAGAATTCCTACTCCAAGAGTACCTGTTACTCCAACCGAAACCGTGGAGGTTCTTCTTCATCTTAAGGCCTCGGCAACACGTTTGGATCGATACGCGTGTCTGGAATTTGTTCAGAAAATCGAGAAATGGGGTTCGGAGAGCGAGAGAAACAGAAGGTGTATTGTGGACAATGGTGCTCCTGGTGTATTAGCCTCCGCATTTCATGAATTTGCGAGTGATTCTCTTGAGGAGAATGTGAGCGTGCTAGAGGAGATTTTGTGTGCCTTAAATTGGATGCTTCCACTTCAATTCGAAGCCCAGAAAATTTTGGGATCTTCAGATTCTTTGCGTTGCTTGGTTTCGTTCTTGAAGCACCAAGATCTTTCTGGAAAACAGAACGCCATTGTTGCTTTGAGAGAGATTCTTTCTTCTGGTGATGAACAGGTTTTTGAGGCTATGGCAGAAATCGAAGGGACCAATGAACTATTAGTGGAGTTTGTTAACAAGAGAATTAGCCCAAAAATCACGAAAGCCTCATTGGGTATTGTCTACTACTTGGTTTCATCTTCTTACCCATCAAGTCAGAAGGTGAAGCTGGAATTTATTGAACTGGGTTTGGTCTCTTCACTTCTGGAGATTCTAACAGACACAGAGAAAAGCCTATGTGAGAAGGCTTTAGGTGTTTTTGACTCACTCTGTAGCTGTGAAAAGGGGAGAGAAAAAGCTTATAGTAATGCTCTAACAGTACCTTTACTGGTGAAGAAGATTTTGAGAGTTTCAGCTTTGGCAACAGATTACTGTGTGTCTGCTTTGTGGAAGTTGTGCAGATATGGATACAAAGATGATGATGATGAAGAAGTAGAAGAGGCTCTGGTTGAGGCACTTCAAGTTGGTGCCTTCCAGAAGCTGCTGGTGGTGTTGCAGGTTGGTTGTGGTGATGAGACAAAGGAGAAAGCAACTGAGCTTCTCAAATTGTTCAATCCTCATAGGGGTGGCTTGGAGTGCATAGATTCAGATTTCAAGAATCTCAAGAGGTCATTTTAG 1314 0.4346 MVFGWASRRKKNRKPNLELVIPNHFKCPVSLDLMKDPVTLSTGITYDRESIERWFEDGNFTCPMTNQILTSFDLIPNHTLRLMIQDWCVENRQFGIERIPTPRVPVTPTETVEVLLHLKASATRLDRYACLEFVQKIEKWGSESERNRRCIVDNGAPGVLASAFHEFASDSLEENVSVLEEILCALNWMLPLQFEAQKILGSSDSLRCLVSFLKHQDLSGKQNAIVALREILSSGDEQVFEAMAEIEGTNELLVEFVNKRISPKITKASLGIVYYLVSSSYPSSQKVKLEFIELGLVSSLLEILTDTEKSLCEKALGVFDSLCSCEKGREKAYSNALTVPLLVKKILRVSALATDYCVSALWKLCRYGYKDDDDEEVEEALVEALQVGAFQKLLVVLQVGCGDETKEKATELLKLFNPHRGGLECIDSDFKNLKRSF 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1688 437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 97 IPR013083 -
Dere06g1688 437 PANTHER WDSAM1 PROTEIN 18 417 IPR045185 GO:0061630
Dere06g1688 437 SMART Ubox_2 24 87 IPR003613 GO:0004842|GO:0016567
Dere06g1688 437 CDD RING-Ubox_PUB 22 74 IPR045210 -
Dere06g1688 437 Gene3D - 116 415 IPR011989 -
Dere06g1688 437 SUPERFAMILY ARM repeat 127 413 IPR016024 -
Dere06g1688 437 FunFam RING-type E3 ubiquitin transferase 21 92 - -
Dere06g1688 437 SUPERFAMILY RING/U-box 18 97 - -
Dere06g1688 437 Pfam U-box domain 21 92 IPR003613 GO:0004842|GO:0016567
Dere06g1688 437 ProSiteProfiles U-box domain profile. 20 94 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1688 Dere-ChrDere06 31501059 31502372 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1688 1 437 U-box Gene Family AT5G37490 44.889 2.69e-119 353