Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1672 ATGCTAGCGAGTAACTCTCCCTCTTCAGCTCCCACTTCGGAGCCCTTTCCCTGCTGTGACAATGGTGCTATCACTACCAACAAAAGAAAGAGAAGACCTGCAGGAACTCCAGATCCGGACGCTGAGGTGGTGTCGCTGTCGCCGAAGACGTTGCTGGAATCGGACCGATACGTGTGCGAGATCTGCAACCAGGGGTTCCAGAGGGACCAGAACCTGCAGATGCACCGGCGGCGGCACAAGGTGCCGTGGAAGCTGCTCAAGAGGGAGACTCCGGCGGCAAGGAAGCGGGTGTTCGTGTGCCCGGAGCCGACGTGCTTGCACCACGACCCGTGCCACGCGCTTGGCGATCTCGTCGGAATAAAGAAGCACTTCAGGAGAAAGCACAGTAACCACAAGCAATGGGTCTGCGAGAGATGCTCCAAAGGCTACGCAGTGCAGTCAGATTACAAAGCACATCTCAAGACCTGTGGCACCAGAGGCCACTCTTGCGATTGTGGTCGAGTATTCTCAAGGGTGGAGAGCTTTATCGAACACCAAGATGCTTGTAATCTGGGGCGGCTCCGGCCGGAATTGCATCCACCACAGCAGCAGCCGCCGGCGTGCTTGTCTCGGACCGCTTCGAGCCCGAGCCCGTCGAGCGAAACCAATTTCAGCACAGGTCCGAATTGGCATGGTCTAGTCTTGCCTAAGCCAACCGAACCCACATTCTTGAACCCTATCACCACCACTACTGCTGCTCATGAAACTTCATCCAACAACAACTATAAAGTCTGTCCAAACCTGGACCTTCAGCTGTCCACCACCACTTCCATTATTCCCATTGATATAACAGCTGCATCACCTAAGAAAGATGAAACCCGTTCTACCCACTTGCAGTTCTCAATTGGGTCATCGGAAGTCGGCGAGAAAAATGAATCAAATAGCTTCAATCGTCATAGAAATTCTCCCAAGGAGAGCTGTAATAGCAACGAGAAACCTGGAGGCGTAGGGATGAGGGTTCTTCATCAAGAGCAAGCACGTGATCAGTTGAGGCTTGCCATGGCGGAGAAGGCATATGCAGAGGAGGCGAGGAAGCAAGCGAAACGACAGATAGAAGTAGCGGAGAAGGAGTTTGCAAACGCCAAGAGGATCAGACAAGAAGCACAAGCCGAGCTAGACAAAGCCTATGCCTTGAAACAGCATGCCATAAAACAGATCAACTCCGTCATGCTTCAAATCACTTGCCATGCTTGCAAACGACAATATCATCAAGCACAAACGACAACAACCACGGGGGCTCCTCCTCCTCCGCCTCCTCCCCCGGACGAACACTCTTTGGTATTAAGCTACATGTCGTCTGCTATAACGACGGAAGGTGGCGAAGTAGAGAACTACACTAAAAATTATGGGAAAACTACTAACTCGTTATCTATCTAG 1416 0.5212 MLASNSPSSAPTSEPFPCCDNGAITTNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPAARKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNLGRLRPELHPPQQQPPACLSRTASSPSPSSETNFSTGPNWHGLVLPKPTEPTFLNPITTTTAAHETSSNNNYKVCPNLDLQLSTTTSIIPIDITAASPKKDETRSTHLQFSIGSSEVGEKNESNSFNRHRNSPKESCNSNEKPGGVGMRVLHQEQARDQLRLAMAEKAYAEEARKQAKRQIEVAEKEFANAKRIRQEAQAELDKAYALKQHAIKQINSVMLQITCHACKRQYHQAQTTTTTGAPPPPPPPPDEHSLVLSYMSSAITTEGGEVENYTKNYGKTTNSLSI 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1672 471 MobiDBLite consensus disorder prediction 296 328 - -
Dere06g1672 471 MobiDBLite consensus disorder prediction 1 15 - -
Dere06g1672 471 Gene3D Classic Zinc Finger 119 191 - -
Dere06g1672 471 MobiDBLite consensus disorder prediction 1 44 - -
Dere06g1672 471 MobiDBLite consensus disorder prediction 198 222 - -
Dere06g1672 471 Coils Coil 343 398 - -
Dere06g1672 471 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 15 412 IPR031140 -
Dere06g1672 471 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Dere06g1672 471 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Dere06g1672 471 Gene3D Classic Zinc Finger 35 99 - -
Dere06g1672 471 MobiDBLite consensus disorder prediction 419 439 - -
Dere06g1672 471 SUPERFAMILY beta-beta-alpha zinc fingers 54 80 IPR036236 -
Dere06g1672 471 MobiDBLite consensus disorder prediction 187 238 - -
Dere06g1672 471 SMART c2h2final6 134 161 IPR013087 -
Dere06g1672 471 SMART c2h2final6 98 128 IPR013087 -
Dere06g1672 471 SMART c2h2final6 57 79 IPR013087 -
Dere06g1672 471 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Dere06g1672 471 FunFam protein indeterminate-domain 12-like 36 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1672 Dere-ChrDere06 31232394 31235256 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1672 20 457 C2H2 Transcription Factor Family AT2G01940 53.863 1.43e-147 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere06g1672 zf-C2H2 0.0045 CL0361