Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1658 ATGGTGGGGACCACCGTAGCCGATTACGGCGCAACACCCACAATTCTCGAGAAAGTAGATATTTTCCCGGGAATCAAAATCGTGGAAGTTTTGATTTCTCCAGCAATATCTGAGGTATATGTTATCCTCAATTATCTCACTCTTATTGTGTTTCGTCCTGAAGCCTGGCTGCTGGGGTTGTCCTCTATAAAAGTTAGAGTGCTTTCTCCGGCAGGACTTACTCTGATTTTGCTGCAATGGAGATGCAGACGGAGACAAATTAACTTGTATGGATTGGAACTTTCCTATAGATGTATTCGTTTTATCGTAGCTCTGCAATTAGATGTTGAAATTCCTTCGTGGTTATCTGTTTCTATGTATGACCAAATAGAGGGAACAAAGTTGAATAACTCTGGCAATGCTAGTAACAACCATTCCAATGATGGTACGAAATCTGAAAATATTGCCCTGTTGAAGGATAAAACTGATGGAAACAACCATACTCCTAAGGTGAGGAAACCATATACCATTTCCAAGCAGAGGGAGAAGTGGACAGAGGAAGAGCATCAGAAGTTCCTCGAAGCTTTGAAATTGTATGGACGTGGTTGGCGTCAAATCGAAGAACATATAGGTACTAAAACTGCAGTTCAGATTCGAAGCCATGCTCAGAAGTTCTTCTCTAAGGTTGTGCGAGAATCTGATGGCAGTGCTGAAAGTTTTATAAAACCAAGTGATATTCCTCCTCCTCGGCCAAAGAGGAAACCCCTGCATCCATATCCCCGTAAATCAGTTACTTCTATCAAAGGACACACCATAGCAAATGAACCAGAAAGATCTCCATCCCCAAACCTGTTAGTTGCAGAGAAAGACACCCAGTCTCCGACCTCTGTGCTATCTGCAGTTAATTCAGAAGTATTTTCGTCAGCATTTTCAGAGCAGGCTAACAGATGTCAATCACCTAATTCTTGCACCACTGACGTTCACTCAGCCAGTGTATCACCTGCTGAAAAGGAAAATAACAGCTTATCACCTGTCGAAAAAGAAAATGATTGCATGACATCTAGCTCATCTGAGGTGGAAGAGAAAGGATATCTAGCTTCAGTATCTTTATCTGCTGGTTTGAACCTGCAGTTGCTTTCCACGAAGTCCGAGTTGAGTTCCATGGACATTGAATGTTTTAACGAAGATGCTACCAATGTGCCACGTGCCGCAAGTATTAAGCTGTTTGGAAGAACTGTCTGCATGGTAGAAAATCAAAAGTCACCGGATGTAGACGGGGATACCCCCAAGTCAATTACATGCAAGTTTGATGAAGTGCATGGTGCTGAGAATGAAAAGCTCGGCCATGCATGGCCATCCAACCAACTAGGTACACAATTATCACTGGGCATGTGTAATAGTACTGACTGGAATACAGCCCCTGAAGGAGCTGAAGCGGAATGCCCGAAAGAGAACCCGTGTTTTGTTGAACGTGCACCTGATGAAGCTTTGTCACGGTGGAATATGTACCAAAGTCATCCATTTTTTCACATTCGCTCGTGTAACCAAATTCTAAATCCTACACCTATTCGTCCCTCTTTGAAAGAGAGCATGTTAGAGAAGGAAACTTCTTGTACGGGTTCAAATGCTGAACCAGTCTGTGAAATGGAAAATGGAGACAGGAACTCAGAATCTGATGATTCTCAAAGCCAATTGTCTCATAATGAGCGAGGAATTGTACAGCATAGAAAGTCTTCTAGAGGGTTTGTACCATATAAAAGATGCTTAGCTGAGAGAGATGCCAATGCAGCTATTGTTTCCTGGGAAGAGAGGAAGGGGCAACGAGCTCGGGTATGCTCATAG 1821 0.43 MVGTTVADYGATPTILEKVDIFPGIKIVEVLISPAISEVYVILNYLTLIVFRPEAWLLGLSSIKVRVLSPAGLTLILLQWRCRRRQINLYGLELSYRCIRFIVALQLDVEIPSWLSVSMYDQIEGTKLNNSGNASNNHSNDGTKSENIALLKDKTDGNNHTPKVRKPYTISKQREKWTEEEHQKFLEALKLYGRGWRQIEEHIGTKTAVQIRSHAQKFFSKVVRESDGSAESFIKPSDIPPPRPKRKPLHPYPRKSVTSIKGHTIANEPERSPSPNLLVAEKDTQSPTSVLSAVNSEVFSSAFSEQANRCQSPNSCTTDVHSASVSPAEKENNSLSPVEKENDCMTSSSSEVEEKGYLASVSLSAGLNLQLLSTKSELSSMDIECFNEDATNVPRAASIKLFGRTVCMVENQKSPDVDGDTPKSITCKFDEVHGAENEKLGHAWPSNQLGTQLSLGMCNSTDWNTAPEGAEAECPKENPCFVERAPDEALSRWNMYQSHPFFHIRSCNQILNPTPIRPSLKESMLEKETSCTGSNAEPVCEMENGDRNSESDDSQSQLSHNERGIVQHRKSSRGFVPYKRCLAERDANAAIVSWEERKGQRARVCS 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1658 606 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 169 223 IPR017930 -
Dere06g1658 606 MobiDBLite consensus disorder prediction 523 569 - -
Dere06g1658 606 Gene3D - 176 223 - -
Dere06g1658 606 NCBIfam myb-like DNA-binding domain, SHAQKYF class 172 221 IPR006447 GO:0003677
Dere06g1658 606 ProSiteProfiles Myb-like domain profile. 169 219 IPR001005 -
Dere06g1658 606 MobiDBLite consensus disorder prediction 310 342 - -
Dere06g1658 606 SUPERFAMILY Homeodomain-like 168 222 IPR009057 -
Dere06g1658 606 CDD SANT 176 219 IPR001005 -
Dere06g1658 606 SMART sant 173 221 IPR001005 -
Dere06g1658 606 PANTHER SWI/SNF COMPLEX-RELATED 130 389 - -
Dere06g1658 606 MobiDBLite consensus disorder prediction 229 278 - -
Dere06g1658 606 Pfam Myb-like DNA-binding domain 174 217 IPR001005 -
Dere06g1658 606 ProSiteProfiles SANT domain profile. 172 223 IPR017884 -
Dere06g1658 606 FunFam protein REVEILLE 6 isoform X1 176 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1658 Dere-ChrDere06 31052303 31057537 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dere06g1658 Myb_DNA-binding 2.2e-13 CL0123