Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1656 ATGGGGGAAGGAGGTGCTAGAGGAAACGGTTGTTTTTTCCTTCCAGGGCTCATAATGGTGAGAAAAAAGAGAACTGAAGCACCCGTCAGAGGTGAAAGCTCTGAGACTCAGGAGAGTGGTGGCAGTGGTCAAGGTCCTCAACACCCTGCTGAAAGGAGTGCTCCACCCACACAACCGGTGGTAGGAGGGGGAGGATCTCAAGGAGGTAGAGGTTGGGGTCCCCAAGGAGGACGGGGAGGTTATGGTGGGGGACGTGGTCGTGGAGTACCACAACAGCAGTATGGTGGCCCCCCTGACTATCAAGGAAGGGGGAGGGGAGGTACCCCTCAGCAGGGAGGTCGCGGTCGTGGTGGTGGGGGCATGGGCAGTGGCCGTGGTAGTGGACCTTCTTATGGTGGCCCATCCCGACCTCAAGCTCCCGAGCTGCACCAAGCTACCTCAGTTCCATATCAAGCTGGGGTGACTCCTCGTTCTGCATTATCTGAGGCCAGTTCTTCATCTCAACTGCCTGAGACCTCACAAGTGGAACAGCAAATGGGACAGATGACAATTCATTCAGAAGCTGTTTCTCCTATTCCACCCTCAAGTAAATCAATGAGGTTTCCTCTTAGGCCTGGAAACGGTAGCATGGGCACCAAATGTATAGTTAAGGCGAACCACTTCTTTGCTGAGTTACCTAAAAAAGATCTCCATCAGTATGATGTTACCATCACACCAGAAGTGACATCAAGGGGTGTCAACCGTGCTGTTATGGAGCAGTTGGTGAAGCTATACCGGGAGTCTCACCTGGGAAAGAGACTTCCTGCTTATGATGGGCGCAAGAGTCTTTATACTGCTGGTCCACTTCCTTTTATTTCGAAGGAGTTCAGAATCACTCTCCTTGATGAGGATGATGGATCAGGAGGGCCAAGAAGAGAGAGGGAGTTCAAAGTTGTAATAAAATTGGCTGCCCGGGCAGACCTTCATCATCTAGGACTCTTTCTGCAGGGGAGGCAAACTGATGCTCCTCAAGAAGCTCTTCAGGTTCTTGACATCGTTTTACGTGAACTACCCACCACTAGGTATTGTCCTGTTGGAAGGTCATTTTATTCACCTGATTTAGGTAGAAGGCAACCATTAGGTGAGGGATTGGAAAGTTGGCGTGGTTTCTATCAAAGTATTCGTCCCACGCAGATGGGATTATCTCTCAACATTGATATGTCCTCCACTGCTTTTATTGAACCATTGCCAGTAATTGACTTTGTGACTCAGCTGCTCAATAGGGATGTCTCCACCCGCCCATTGTCTGATGCAGATCGTGTAAAGATTAAGAAAGCACTTCGGGGTGTCAAAGTTGAAGTGACACACCGGGGAAATATGAGAAGAAAATATCGCATCTCTGGTCTGACTTCACAGGCAACCAGAGAGCTAACATTCCCTGTTGATGAGAGGGGAACAATGAAGTCTGTTGTGGAGTATTTCTATGAGACGTATGGGTTTGTCATTCAACATACGCAATGGCCTTGCTTGCAAGTGGGCAATGCACAGAGACCAAACTATTTACCAATGGAGGTTTGTAAGATAGTAGAAGGTCAAAGATACTCGAAGAGGCTGAATGAAAGACAGATTACTGCTTTGCTCAAAGTCACGTGCCAGCGACCTATCGAAAGGGAGCGTGATATTATGCAGACGGTTCATCATAATGCTTACCATGAGGATCCTTATGCTAAAGAGTTTGGAATTAAAATCAGTGAGAAGCTAGCCCAAGTCGAAGCCCGCATCCTTCCTGCACCCTGGCTTAAATACCACGATACAGGTAGAGAAAAGGATTGCCTACCTCAAGTTGGTCAATGGAATATGATGAATAAGAAAATGGTCAATGGAGGAACAGTCAACCATTGGATCTGCATAAATTTTTCCAGGAATGTTCAAGATAGTGTGGCACGTGGGTTTTGTTATGAACTTGCTCAAATGTGTTATATATCTGGCATGGCGTTCAACCCTGAACCAGTACTTTCCCCACTCAGCGCTCGCCCTGACCTGGTGGATAAGGTTCTCAAAACACGCTATCTTGATGCAAAATCAAGACTGCAGGGAAAGGAGCTTGATCTTCTTATTGTAATTTTGCCTGATAATAATGGCTCTCTATATGGTGACCTGAAACGTATATGTGAGACAGATCTTGGGGTTGTTTCTCAGTGCTGTTTGACTAAGCATGTTTATAAAATGAGCAAGCAGTACCTTGCAAATGTTGCCTTGAAAATTAATGTTAAGGTTGGTGGAAGGAATACAGTGCTTGTTGATGCACTTTCACGGCGCATTCCTTTAGTGAGTGACCGACCTACGATTATTTTTGGAGCTGATGTAACTCATCCACATCCTGGAGAGGATTCAAGTCCATCCATTGCTGCTGTTGTGGCCTCTCAAGATTGGCCTGAAATTACAAAGTATGCTGGTTTGGTGTGTGCTCAGGCACATCGACAGGAGCTCATCCAAGACCTTTTCAAACAATGGCAAGATCCAGTGAGGGGAACAGTAACTGGTGGAATGATCAAGGAACTGCTCATATCATTCCGGAGGGCCACAGGGCAGAAGCCACAGCGGATCATATTTTACAGGGATGGTGTGAGTGAGGGCCAGTTCTATCAGGTTTTACTGTTCGAGCTTGATGCTATACGCAAGGCGTGTGCATCCCTGGAGCCTAATTATCAGCCTCCTGTCACATTTGTGGTTGTTCAAAAGCGCCATCATACAAGGCTATTCCCTAACAACCATCATGACAAGAGTTCTGTTGACCGAAGCGGGAATATATTGCCTGGCACCGTTGTAGATTCCAAGATTTGCCACCCTACTGAGTTTGACTTTTATCTTTGTAGCCATGCTGGGATACAGGGCACAAGCCGTCCGGCTCATTACCATGTGTTATGGGATGAAAATAATTTTACAGCTGATGCACTGCAAACATTAACAAACAACCTTTGTTATACTTATGCAAGATGCACTCGTTCTGTTTCAATTGTGCCCCCTGCATACTATGCTCATTTGGCTGCCTTCCGAGCTCGATTTTATATGGAACCTGAGACATCGGAGAGTGGTTCTATGGCTAGTGGTGCTGCTGCTGCACGTGGAGTTGGTGGTGCAGGACGCAGCACTCGCCTGCCGGGTGCCAGTGCTGCTGTAAGGCCCCTTCCTGCGCTTAAGGAGAATGTGAAGAGGGTCATGTTCTATTGTTAA 3213 0.4721 MGEGGARGNGCFFLPGLIMVRKKRTEAPVRGESSETQESGGSGQGPQHPAERSAPPTQPVVGGGGSQGGRGWGPQGGRGGYGGGRGRGVPQQQYGGPPDYQGRGRGGTPQQGGRGRGGGGMGSGRGSGPSYGGPSRPQAPELHQATSVPYQAGVTPRSALSEASSSSQLPETSQVEQQMGQMTIHSEAVSPIPPSSKSMRFPLRPGNGSMGTKCIVKANHFFAELPKKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFISKEFRITLLDEDDGSGGPRREREFKVVIKLAARADLHHLGLFLQGRQTDAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNRDVSTRPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTMKSVVEYFYETYGFVIQHTQWPCLQVGNAQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPIERERDIMQTVHHNAYHEDPYAKEFGIKISEKLAQVEARILPAPWLKYHDTGREKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRNVQDSVARGFCYELAQMCYISGMAFNPEPVLSPLSARPDLVDKVLKTRYLDAKSRLQGKELDLLIVILPDNNGSLYGDLKRICETDLGVVSQCCLTKHVYKMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEITKYAGLVCAQAHRQELIQDLFKQWQDPVRGTVTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLFELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFPNNHHDKSSVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADALQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSESGSMASGAAAARGVGGAGRSTRLPGASAAVRPLPALKENVKRVMFYC 1070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1656 1070 Gene3D paz domain 402 527 - -
Dere06g1656 1070 Pfam N-terminal domain of argonaute 213 347 IPR032474 -
Dere06g1656 1070 SMART DUF1785_2 356 408 IPR014811 -
Dere06g1656 1070 Pfam Glycine-rich region of argonaut 95 189 IPR024357 -
Dere06g1656 1070 Pfam Argonaute linker 1 domain 357 407 IPR014811 -
Dere06g1656 1070 Pfam PAZ domain 413 538 IPR003100 GO:0005515
Dere06g1656 1070 FunFam Protein argonaute-2 402 528 - -
Dere06g1656 1070 Gene3D - 587 760 - -
Dere06g1656 1070 MobiDBLite consensus disorder prediction 24 181 - -
Dere06g1656 1070 MobiDBLite consensus disorder prediction 140 181 - -
Dere06g1656 1070 SMART PAZ_2_a_3 413 545 IPR003100 GO:0005515
Dere06g1656 1070 MobiDBLite consensus disorder prediction 32 46 - -
Dere06g1656 1070 Pfam Piwi domain 698 1017 IPR003165 GO:0003676
Dere06g1656 1070 SUPERFAMILY Ribonuclease H-like 683 1018 IPR012337 -
Dere06g1656 1070 CDD Piwi_ago-like 567 1017 IPR045246 -
Dere06g1656 1070 ProSiteProfiles PAZ domain profile. 409 523 IPR003100 GO:0005515
Dere06g1656 1070 FunFam protein argonaute 10-like 766 1070 - -
Dere06g1656 1070 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 189 1019 - -
Dere06g1656 1070 FunFam Argonaute 10 587 760 - -
Dere06g1656 1070 ProSiteProfiles Piwi domain profile. 697 1018 IPR003165 GO:0003676
Dere06g1656 1070 Pfam Argonaute linker 2 domain 549 595 IPR032472 -
Dere06g1656 1070 Gene3D - 766 1070 IPR036397 GO:0003676
Dere06g1656 1070 Pfam Mid domain of argonaute 606 680 IPR032473 -
Dere06g1656 1070 CDD PAZ_argonaute_like 408 522 - -
Dere06g1656 1070 SUPERFAMILY PAZ domain 215 559 IPR036085 GO:0005515
Dere06g1656 1070 SMART Piwi_a_2 697 1018 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1656 Dere-ChrDere06 31020526 31027770 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1656 99 1070 Eukaryotic Initiation Factors Gene Family AT1G48410 82.533 0.0 1635