Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1637 ATGTTCCCATTTCACAATCAAGCTATCCTCCCGTCTTCCTCCTTCATTCTCTTTGATAATTTCACTCGCTCGTTATCCTCTCTCTATTTCTCTATTTCTTCCACGGTTGATATGTCTTCTGCCGGCGGCGACCGCGGAGGCGGTGGCGGAGGCGGCGGCAGGGTTGCCTCCGGCGCTTCTTCTCGACTCTATTTCTGCCACCAGTGCAACTGCACCGTATCCATTACGACTTTGTCTTCGTCTGATCTCGTCTGTCCCAATTGCAACGGCGAATTCGTTGAGGAAGTCGATAATCCAATTCCTAATCCGAGCCCTAATCCTACTAATCCCTTCTTTTCGTTTACCACTGAGTTTGGTGGCGGCGGCGGCGGCAGTGCTGGCTTTCCTCTAGTGTTTTCTACCACTTCCGGCGGCGGCGGCGGCGGTGCTAGTGGGCCGACGTTCGACGATCTTTCGGCCCTTTTTGGTGGTGGACCTAACCGATCGTCTCCGTTTGGAGAAACTGATGCGTTCAATCCTTTTGTATTTCTCCACAACCATCTTCAAACCCTGAGAGCCGGCGGTGCTAATGTTCAATTTGTGATAGAGAACTCCGGAGACCTGAGTGGAACCTTCCGTCTCCCCCCAAATCTCAATTTTGGTGATTACTTTTTCGGACCTGGTCTTGAGCAATTGATTCAACAGCTTGCGGAGAACGATCCGAACCGATATGGGACGCCCCCTGCTTCGAAATCTGCCATCGAGGGGCTCCCTGGTATTAAGATTTCGGAGGAGCTGTTGGCTTCGGATTCATCGCAGTGTGCCGTTTGTAAAGATACATTTGAGCTCGGGAAAGAGGCGAAGCAGATGCCATGCAAACATATTTATCATTCAGACTGCATTTTGCCCTGGTTGGAATTGCACAATTCTTGTCCTGTTTGCCGGTACGAGTTACCAACCGATGATCCTGACTACGAGCAACGAACTCGTCGGACTTCTACCCAGGTGAATCGAAACCAATCTGCAGATGAAGGTGGGTCCGCTGATTCTTCTGGAGGCGGTAATGGTGGCAGTGGCGGTGTTGGTGGTATTGCAGCATCTGGAGATGAGACACAGTCTCCGAGAGAGCGCAGGTTTAGGGTTTCTTTGCCTTGGCCTTTTAGGCAGTTGGCTTCCATAGCCGAGACTAGCAATACTGAGAATGCCAACATTAGCGGAAACAATAGTGGGGAATCAAATCCTGGAAGAAGTGGAAACCAGAATTTTGAGTCGGAGACCAGACAAGAAGATCTCGATTAA 1278 0.5055 MFPFHNQAILPSSSFILFDNFTRSLSSLYFSISSTVDMSSAGGDRGGGGGGGGRVASGASSRLYFCHQCNCTVSITTLSSSDLVCPNCNGEFVEEVDNPIPNPSPNPTNPFFSFTTEFGGGGGGSAGFPLVFSTTSGGGGGGASGPTFDDLSALFGGGPNRSSPFGETDAFNPFVFLHNHLQTLRAGGANVQFVIENSGDLSGTFRLPPNLNFGDYFFGPGLEQLIQQLAENDPNRYGTPPASKSAIEGLPGIKISEELLASDSSQCAVCKDTFELGKEAKQMPCKHIYHSDCILPWLELHNSCPVCRYELPTDDPDYEQRTRRTSTQVNRNQSADEGGSADSSGGGNGGSGGVGGIAASGDETQSPRERRFRVSLPWPFRQLASIAETSNTENANISGNNSGESNPGRSGNQNFESETRQEDLD 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1637 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 229 314 IPR013083 -
Dere06g1637 425 ProSiteProfiles Zinc finger RING-type profile. 267 308 IPR001841 -
Dere06g1637 425 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 163 312 - -
Dere06g1637 425 SMART ring_2 267 307 IPR001841 -
Dere06g1637 425 SUPERFAMILY RING/U-box 247 315 - -
Dere06g1637 425 Pfam Ring finger domain 266 308 IPR001841 -
Dere06g1637 425 MobiDBLite consensus disorder prediction 325 347 - -
Dere06g1637 425 Pfam zinc-ribbon 63 95 IPR039525 GO:0061630
Dere06g1637 425 CDD RING-H2_RNF126-like 266 308 - -
Dere06g1637 425 MobiDBLite consensus disorder prediction 311 425 - -
Dere06g1637 425 FunFam E3 ubiquitin-protein ligase RING1-like 228 314 - -
Dere06g1637 425 MobiDBLite consensus disorder prediction 384 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1637 Dere-ChrDere06 30887361 30888638 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1637 208 323 C3H Transcription Factor Family AT5G01980 50.862 3.39e-35 134