Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1601 ATGTCACCGTCATCAACACCTCAAGTCATCACCTGCAAAGCTGCGGTGGCATGGGGAGCTGGACAGCCATTGGTAATGGAGGAAGTTGAAGTGAGCCCTCCCCAGCCCTTGGAGATTCGGATCAAAGTTGTCTCCACCTCTCTCTGTCGCAGTGACCTCGCCGCTTGGGAATCCCAAACCATATTTCCTCGCATATTGGGCCATGAAGCATCAGGGATTGTTGAGAGTGTTGGTGAGGGAGTGACTGAATTCAAGGACGGGGACCATGTGCTAACAGCCTTCATCGGGGAATGCATGGCATGCAGGATGTGCAAATCTGGAAAAACTAATATATGTCAAGTTTTAGGATTGGAAAGACAAGGTTTAATGCATAGTGATCAGAAGACTCGATTTTCAGTAAAAGGCAAGCCTATTTATCACTACTGTGCTGTTTCAAGTTTCAGTGAATATACAGTAGTGCATTCTGGATGTGCAGTCAAAGTCGGCCTGAATGCTCCTCTTGAGAAAATATGCCTTTTGAGCTGTGGAGTTGCTGCAGGTCTGGGTGCGGCATGGAATGTTGCTGATGTATCAGAAGGATCAACAGTGGTGATATTTGGTCTTGGCACTGTTGGCCTTTCTGTTGCACAAGGTGCCAAACTTAGGGGTGCATCTCGAATAATTGGTGTGGATAACAACCCTCAGAAGTGTGAAAAAGCTAAAGCTTTTGGAATTACAGAAGTTGTTAACCCAAATTCCTGTGATGAACCTATTGCTCAGGTTATTAAGCGCATTACCAATGGTGGAGCAGATTTCTCTTTCGAATGCATAGGTGACACTGATATGATAACCACTGCATTGCAGTCATGCTGTGATGGATGGGGTTTGACTGTTACCCTTGGTGTGCCAAAAGTGAAGCCTGAGATGTCAGCTCATTATGGACTATTATTAATGGGAAGAACTTTGAAAGGATCTTTATATGGAGGATGGAAACCCAAATCTGATCTCCCTTCATTAGTGGAGAAGTATGTGAATAAGGAAATTCAGATTGATGACTACATAACACACGATTTGCCATTTGATGACATCAACAAAGCTTTCAATCTCATGACAGATGGCAGGTGTCTGCGTTGCGTTATCCACATGCCTAGGTGA 1134 0.4462 MSPSSTPQVITCKAAVAWGAGQPLVMEEVEVSPPQPLEIRIKVVSTSLCRSDLAAWESQTIFPRILGHEASGIVESVGEGVTEFKDGDHVLTAFIGECMACRMCKSGKTNICQVLGLERQGLMHSDQKTRFSVKGKPIYHYCAVSSFSEYTVVHSGCAVKVGLNAPLEKICLLSCGVAAGLGAAWNVADVSEGSTVVIFGLGTVGLSVAQGAKLRGASRIIGVDNNPQKCEKAKAFGITEVVNPNSCDEPIAQVIKRITNGGADFSFECIGDTDMITTALQSCCDGWGLTVTLGVPKVKPEMSAHYGLLLMGRTLKGSLYGGWKPKSDLPSLVEKYVNKEIQIDDYITHDLPFDDINKAFNLMTDGRCLRCVIHMPR 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1601 377 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 166 339 IPR036291 -
Dere06g1601 377 Pfam Zinc-binding dehydrogenase 204 327 IPR013149 -
Dere06g1601 377 Gene3D - 15 370 - -
Dere06g1601 377 SUPERFAMILY GroES-like 6 185 IPR011032 -
Dere06g1601 377 FunFam S-(hydroxymethyl)glutathione dehydrogenase 180 318 - -
Dere06g1601 377 Pfam Alcohol dehydrogenase GroES-like domain 38 160 IPR013154 -
Dere06g1601 377 CDD alcohol_DH_plants 10 374 - -
Dere06g1601 377 FunFam Alcohol dehydrogenase 6 15 195 - -
Dere06g1601 377 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 67 81 IPR002328 GO:0008270|GO:0016491
Dere06g1601 377 SUPERFAMILY GroES-like 326 374 IPR011032 -
Dere06g1601 377 Gene3D - 180 318 - -
Dere06g1601 377 PANTHER ALCOHOL DEHYDROGENASE 8 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1601 Dere-ChrDere06 30238238 30241748 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1601 38 175 Monolignol Biosynthesis Gene Families AT4G37990 26.056 1.48e-09 57.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere06g1601 06 30238238 30241748 Dere06g1601 06 30238238 30241748 ECH