Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1548 ATGAGGCCTCGCCTTCAAAACCCAAAGTCTCAGTCTCCATCTCTCGCCGCTGAGTTTGGGGGCAGAGCCACCGGCAACGGAGGAAGAAGGGCTGCTCAGCCGTCACCAACACCTCAAGTAGTGGACCAAAATAGAGAGACAGAGAGCTATGGGAAGGCGCCGACCGAGCCGATCTTAGTCTGCTCAGATAAGATCAACAAAAACAGAGTAGCATCATATGACAGTAGCAACTATCTTCTCTACTTTCCAACGTTGACGTTGATTTTGAATTCTGAATTCCCAAACAGCAGATTTTCGAGTGGGTTACTTGGGCCAAAGATTTCTGTCATATCAATCATGGCAACTAGACTTCAGTTTGAGAATTCATGTGAAGTTGGAGTATTTTCAAAACTCACCAATGCCTACTGTTTGGTTGCCATTGGAGGTTCTGAAAACTTCTACAGTGCATTTGAGGCTGAGTTAGCAGATGTTATCCCTGTGGTAAAAACTTCCATTGGTGGCACTCGTATTATTGGTCGTCTTTGTGCTGGAAACAAGAATGGGCTTCTTTTGCCTCATACCACCACTGACCAAGAACTTCAACATTTGAGAAACAGTCTGCCTGATCAGGTTGTTGTTCAGCGCATTGAAGAAAGGTTATCTGCTCTGGGTAATTGTATAGCATGCAATGACCACGTGGCTCTCACCCACACTGATCTTGATAGGGAGACTGAGGAGATGATTGCTGATGTTCTTGGAGTAGAAGTTTTTAGGCAGACCATTGCTGGTAATATTCTCGTAGGTAGTTACTGTGCATTCTCCAATAGAGGCGGCTTGGTCCACCCTCATACTTCCATTGAAGACTTGGATGAACTTTCCACGCTACTTCAGGTTCCTTTGGTGGCAGGGACTGTAAATCGTGGTAGTGAGGTAGTAGCTGCTGGCATGACAGTTAATGATTGGACGGCCTTCTGTGGTTCAGACACCACAGCAACAGAACTCTCTGTGATTGAGAGTGTTTTTAAGCTGAGGGAAGCCCAACCCAGTGCCATTGTGGATGAGATGAGGAAATCCCTCATTGATAGCTATGTCTGA 1074 0.459 MRPRLQNPKSQSPSLAAEFGGRATGNGGRRAAQPSPTPQVVDQNRETESYGKAPTEPILVCSDKINKNRVASYDSSNYLLYFPTLTLILNSEFPNSRFSSGLLGPKISVISIMATRLQFENSCEVGVFSKLTNAYCLVAIGGSENFYSAFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCAFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVVAAGMTVNDWTAFCGSDTTATELSVIESVFKLREAQPSAIVDEMRKSLIDSYV 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1548 357 Pfam eIF-6 family 116 315 IPR002769 GO:0042256|GO:0043022
Dere06g1548 357 Gene3D - 113 337 - -
Dere06g1548 357 MobiDBLite consensus disorder prediction 1 52 - -
Dere06g1548 357 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 113 356 IPR002769 GO:0042256|GO:0043022
Dere06g1548 357 NCBIfam translation initiation factor IF-6 116 336 IPR002769 GO:0042256|GO:0043022
Dere06g1548 357 SUPERFAMILY Pentein 113 336 - -
Dere06g1548 357 CDD IF6 114 335 IPR002769 GO:0042256|GO:0043022
Dere06g1548 357 Hamap Translation initiation factor 6 [eif6]. 102 357 IPR002769 GO:0042256|GO:0043022
Dere06g1548 357 FunFam Eukaryotic translation initiation factor 6 113 337 - -
Dere06g1548 357 SMART eIF6neu2 115 316 IPR002769 GO:0042256|GO:0043022
Dere06g1548 357 MobiDBLite consensus disorder prediction 30 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1548 Dere-ChrDere06 29219930 29228000 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1548 113 357 Eukaryotic Initiation Factors Gene Family AT3G55620 91.837 4.85e-173 479
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere06g1548 06 29219930 29228000 Dere01g1186 01 23977276 23981235 CCT