Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1537 ATGGACTCTAGCAATTGTCATGTTGATTGTAAAAGACCAAGCCCTTCATCTTCTTCAGCCATTAATGAGGAGGTTAGGGAAGAGAAAAAGATTACTGTAATAAGATACAAGGAATGCCTCAAGAACCATGCAGCTTCAATAGGAGGACATGCAACTGATGGGTGTGGTGAGTTCATTTCTTCAGCAGAAGAAGGCACTCTTGAAGTTTTCAAATGCTCAGCCTGCAATTGCCACAGAAACTTCCACAGAAAAGAGATTCAACATTGTTATTCTAGTTCCTCCCATATTTTCCCTGAAAATTCTGATCAATACTATCTCACTCCATTGCTTTCAAATACTACTGCTGCTACTACTCAGATCACAAAGCCCATTATTTTGGACCATTTATTATCATCTCCCAACAAAAGTGGGTCAAATCTTTCTGACCAGTCCAATGATCATGAGGAAGAAGATCATCATGGTGTTAATTACAAAGAGGTGGAAAAGCCAGGTGATGAGAAAATGATACTGAAGAAGAGGTTTAGGACTAAGTTCAGTGAAGAACAGAAGGAGAAGATGGTGAGGTTTGCAGAGAAGGCAGGTTGGAAGATGCAGAAGCTGGAGGAATCTGTGGTGCAGCAGTTTTGCCAAGAGATAGGAATCAAGAGAAGAGTTCTCAAAGTGTGGATGCACAATAACAAGAACACTTATGCCAAAAGAAACTTGTCCTCTAATAGCTAG 720 0.4028 MDSSNCHVDCKRPSPSSSSAINEEVREEKKITVIRYKECLKNHAASIGGHATDGCGEFISSAEEGTLEVFKCSACNCHRNFHRKEIQHCYSSSSHIFPENSDQYYLTPLLSNTTAATTQITKPIILDHLLSSPNKSGSNLSDQSNDHEEEDHHGVNYKEVEKPGDEKMILKKRFRTKFSEEQKEKMVRFAEKAGWKMQKLEESVVQQFCQEIGIKRRVLKVWMHNNKNTYAKRNLSSNS 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1537 239 MobiDBLite consensus disorder prediction 135 162 - -
Dere06g1537 239 MobiDBLite consensus disorder prediction 1 21 - -
Dere06g1537 239 NCBIfam homeobox domain, ZF-HD class 171 228 IPR006455 -
Dere06g1537 239 MobiDBLite consensus disorder prediction 142 162 - -
Dere06g1537 239 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 35 86 IPR006456 -
Dere06g1537 239 Gene3D - 157 233 - -
Dere06g1537 239 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 21 229 - -
Dere06g1537 239 Pfam ZF-HD protein dimerisation region 34 86 IPR006456 -
Dere06g1537 239 SUPERFAMILY Homeodomain-like 168 232 IPR009057 -
Dere06g1537 239 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 36 85 IPR006456 -
Dere06g1537 239 MobiDBLite consensus disorder prediction 1 23 - -
Dere06g1537 239 FunFam Zinc-finger homeodomain protein 2 159 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1537 Dere-ChrDere06 29044782 29045501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1537 25 238 ZF-HD Transcription Factor Family AT2G02540 45.455 6.00e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Dere06g1537 ZF-HD_dimer 4.2e-28 No_clan