Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1534 ATGGTCGTGAGCGGAGGGAGGCCATTGAAGCGGATGAAGACGAGAGTCGCGGCTGACTTCCACGACTTCCTCACTTTTCCCTCACCGTCACTCGCTGTGGCGGACGAGTTCTCCGGCTGGCCCTTCCGCACGAACGTACGCTCGTTCCTGTCGAAGCACGCAATGCTACCACCGCCGTCGGCGTTGTTTCCTCACCTGCTGACGTGGCAGATAATGTTGCAAGTCGGAGACTCGACGGACGGACCGGACTCGATGCCGGCGGTGGTCTGTCTCGACATTGTGGAAGAGGATGTGGCCAGATCCAGATTAGTCGCTTGCGATCAATGTCGAGTTGTTGGTGAGTCGACTCGTCAGTACTTGACCGGTTCTTTTTCCATACCAGTAGATCGCTTTGCTTTCGTGGTTTTCGAGTTTCTCCCGGTTGACTGTTTCACGTACAACCCCGGGAGCTCAGGAGAAAATGGCTGGAGTGGCCATCCAGTGTGCGGGAAACGTTACCGATTTATAATCAAGGCTGATGGTAGCTCCATCGGTGGGTACCACAAGCCATGCATGTGTTGTGGAGATATGTTGCGTTTGTCAGAATCCAAGTGCAAGTTGTGCAACCATGTGACAACCATAGATGATGTTGAAGATTGGGTATACCAGCAATTAGAAAACACATCCCATCTTTTACATGGTTTGGTCCATGCTAATGGTTATAGGCCCTTTTTTCAGGTTTATGGCATGGAAGGGGGCTCGAGAATTTTGTTCATCCTTCTTTACATGGGTAGAAAAGTTAGCATAATGGATGTTTCAAAGAAATATGGGTTGGTGTATTGCCTAACCCATGCTATTACAAAGGGACATCTTTGGTATGGTTACTGGGGCTATCAATTTGGCAGTGTGTCAAGAGCTGATGACGACACTTACAAGAAGAGCCACTATAATGATGCAGGAGTGTCATGTATGTGGGCAATAAGTGACATTGAATGTGTGGAGGGAGCGATGCTTAGAGTGTTGCGTGTAGTGTCTAGGTCCAATTGGGTTAGCTGGCATGCACTTAGGGGTGCGGTCTTTAAGGTGGCCTCTTTGGAGTTGCTTGATTACTGCCTTGGAGAACTAGGAGGAAAGACAATCTTCAGTGGAATGGTTGTTAATGCCCGATGCAATCCTGGTAATAGAGCTTTTGAGTACAGATTTCAAGTTGATGAGCTACTTGGCTATAGCAGTGTCGATGATTCCACCCAGGTCCATCTCTTGTTAGGATCAACAAAGGTGGTTTGTGTCCAAGGAAAATGCATTGGGAAGAATGGGTTGAGCAAGTTCCAAATGGAAGATGGAAATGAGAGGTGGACTATATATTGCACTTGTGGGGCCAAAAATGATGATGGGGAGAGAATGTTGGCTTGTGATGTGTGTGAAGTTTGGAGGCACATTAGGTGTTCCAATATTCATGATGCAAATTCTGTCTCTGCAAGGTTTGTTTGCCCAAGATGCCAAAATTTTGAGTTGAAATCGAATTCTAACAGACACTGCATAGATGAGAAGACTAACATCAGTACTAGTAATAGGTGCTTTGGAAATAGCTTGCTAGCGCCTTCTGATGTTTGGTGA 1596 0.4712 MVVSGGRPLKRMKTRVAADFHDFLTFPSPSLAVADEFSGWPFRTNVRSFLSKHAMLPPPSALFPHLLTWQIMLQVGDSTDGPDSMPAVVCLDIVEEDVARSRLVACDQCRVVGESTRQYLTGSFSIPVDRFAFVVFEFLPVDCFTYNPGSSGENGWSGHPVCGKRYRFIIKADGSSIGGYHKPCMCCGDMLRLSESKCKLCNHVTTIDDVEDWVYQQLENTSHLLHGLVHANGYRPFFQVYGMEGGSRILFILLYMGRKVSIMDVSKKYGLVYCLTHAITKGHLWYGYWGYQFGSVSRADDDTYKKSHYNDAGVSCMWAISDIECVEGAMLRVLRVVSRSNWVSWHALRGAVFKVASLELLDYCLGELGGKTIFSGMVVNARCNPGNRAFEYRFQVDELLGYSSVDDSTQVHLLLGSTKVVCVQGKCIGKNGLSKFQMEDGNERWTIYCTCGAKNDDGERMLACDVCEVWRHIRCSNIHDANSVSARFVCPRCQNFELKSNSNRHCIDEKTNISTSNRCFGNSLLAPSDVW 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1534 531 Pfam PHD-finger 448 495 IPR019787 -
Dere06g1534 531 SUPERFAMILY FYVE/PHD zinc finger 436 495 IPR011011 -
Dere06g1534 531 ProSiteProfiles Zinc finger PHD-type profile. 446 496 IPR019787 -
Dere06g1534 531 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 433 500 IPR013083 -
Dere06g1534 531 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 305 395 - -
Dere06g1534 531 SMART PHD_3 448 494 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1534 Dere-ChrDere06 29013400 29021508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1534 447 493 PHD Transcription Factor Family AT5G22260 48.936 5.84e-10 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dere06g1534 PHD 5.1e-09 CL0390