Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1532 ATGTCTGCCATCAAGAAGGCACCTGAGCAGACTCGCATTGGGGTTGTATTTGACAAGTTGGTGAAGCAGCTTGGGGAACCTGTAGACTTTGAACTTCCGGATTGGTTTAATAAGTGGAGGACAATGCCGTACACCTTTATTAAACGTAATATATATCTCACAAAGAAGGTTAGGAAACGGCTTGATGATGATGGCATTTTCTGTTCCTGCACTCCTTCACCTGGATCATTGAGTGTATGTGGTAGAGACTGCCACTGTGGGATGCTTCTCTCTAGTTGCTCATCAGGCTGTAAATGTGGGAGTTCCTGTCTCAACAAACCATTTCAGAATCGACCTGTGAAAAAGATGAAATTGGTTAAGACTGAGAAATGTGGTTCTGGAATTGTGGCGGATGAAGATATCAAGCAAGGGGAGTTTGTGATAGAATATGTAGGAGAAGTCATTGATGACAAAACATGTGAAGAAAGGCTTTGGAATATGAAACATCGTGGGGAGACAAACTTCTACTTATGTGAAATCAATCGAGATATGGTGATTGATGCAACATATAAGGGAAACAAATCAAGATATATCAATCATAGTTGCTGCCCCAATACTGAGATGCAGAAATGGTTGACTATTATTTCTTTTCCTCATATGGTCATGCAATTGATAATTGATGGTGAAACGAGAATTGGCATATTTGCAACTCGTGACATTAGAAAGGGCGAGCATTTGACATACGATTACCAGTTTGTTCAGTTTGGCGCAGATCAGGATTGTCACTGTGGTGCTGTTAGGTGCAGGCGTAAGCTGGGGGTTCGACCTACCAAGCCTAAAATGTCATCTGAAGCTGCATTGAAATTAGTTGCATATCAGGTGGCTTCATCTTCTTCAAAATAG 882 0.4138 MSAIKKAPEQTRIGVVFDKLVKQLGEPVDFELPDWFNKWRTMPYTFIKRNIYLTKKVRKRLDDDGIFCSCTPSPGSLSVCGRDCHCGMLLSSCSSGCKCGSSCLNKPFQNRPVKKMKLVKTEKCGSGIVADEDIKQGEFVIEYVGEVIDDKTCEERLWNMKHRGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWLTIISFPHMVMQLIIDGETRIGIFATRDIRKGEHLTYDYQFVQFGADQDCHCGAVRCRRKLGVRPTKPKMSSEAALKLVAYQVASSSSK 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1532 293 FunFam Histone-lysine N-methyltransferase 30 282 - -
Dere06g1532 293 SUPERFAMILY SET domain 16 256 IPR046341 -
Dere06g1532 293 CDD SET_ASHR3-like 115 266 - -
Dere06g1532 293 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 37 287 IPR025787 -
Dere06g1532 293 ProSiteProfiles SET domain profile. 114 244 IPR001214 GO:0005515
Dere06g1532 293 SMART PostSET_3 250 266 IPR003616 -
Dere06g1532 293 ProSiteProfiles AWS domain profile. 63 112 IPR006560 GO:0005634|GO:0042054
Dere06g1532 293 Gene3D SET domain 35 283 IPR046341 -
Dere06g1532 293 SMART set_7 114 250 IPR001214 GO:0005515
Dere06g1532 293 PANTHER SET DOMAIN PROTEINS 28 273 - -
Dere06g1532 293 Pfam SET domain 125 243 IPR001214 GO:0005515
Dere06g1532 293 SMART shorttest3 63 113 IPR006560 GO:0005634|GO:0042054
Dere06g1532 293 ProSiteProfiles Post-SET domain profile. 250 266 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1532 Dere-ChrDere06 28993423 28998504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1532 87 262 C2H2 Transcription Factor Family AT2G23740 32.812 3.97e-23 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Dere06g1532 SET 9.9e-20 No_clan