Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1485 ATGGAGGAAAAGGAGAGTTTTGGTTCTGGGCTTGCGGGGAAGGTTAACGAAGCCCCGGAGAGCTTCCACGTGGCTCCGAGAAATGAAAACTCCGGTAAGTTCGCCGGTGGGCCCGAAGCGGAGACTCCGGCGCCTGTAAGTGTGGCGGCGACGGCTACGTCAACTGCAGCTACAGAAGGTAAGAAGAAGAGAGGGAGGCCAAGGAAATATGGTCCCGATGGCACAATGGCGTTGGCGTTGTCTCCGATGCCGATTTCGTCATCAATTCCGTTGACAGGTGACTTCTCAGGTTGGAAACGGGGTAGAGGGCGGCCCATTGAATCTATCAAGAAGTCTTATAAATATGAATACGATAGTCCCGGACCGGGTAATGGAATCGCATACTCAGTTGGTGCCAATTTTACACCCCATGTGCTCACAGTTAATGCTGGCGAGGATGTTACTATGAAGGTTATGTCCTTCTCTCAACAAGGATCCCGTGCTATTTGCATTCTTTCTGCAAACGGAATGATTTCAAATGTAACACTTCGTCAACCAACTTCCTCTGGGGGTACTTTAACATATGAGGGACGATTTGAGATTCTTTCCTTGTCTGGTTCATTTATGCCAACTGAGAATGGATTAACGAAGAGCAGATCTGGTGGAATGAGTGTCTCTTTGGCAGGTCCAGATGGTCGAGTGGTTGGGGGTGGACTTGCTGGTCTGTTAGTTGCTGCAGGCCCTGTGCAGGTTGTCGTGGGCAGTTTCCTTCCAGGTCACCAGCAGGAGCACAAACCCAAGAAGCAGAAGATAGAGTATATATCTACTATCACCCCTACCCATTTTAGTCCCATCTCCGATCAAGAAATACAAGTCAGTTTTGCTGGAGCAAAGCCTATTATGACACCTGCTGCTCTTCAAGGACACAATATTGCTTTTAACAATGTTCAAGGCTCTAGGGACTCATCCACTGATGATAGATCTCCTTTGCCTGAAAAAGAGTCTAATCCCAGCCTATCAAATGCGGGGGTTCCATGCTAA 1020 0.4853 MEEKESFGSGLAGKVNEAPESFHVAPRNENSGKFAGGPEAETPAPVSVAATATSTAATEGKKKRGRPRKYGPDGTMALALSPMPISSSIPLTGDFSGWKRGRGRPIESIKKSYKYEYDSPGPGNGIAYSVGANFTPHVLTVNAGEDVTMKVMSFSQQGSRAICILSANGMISNVTLRQPTSSGGTLTYEGRFEILSLSGSFMPTENGLTKSRSGGMSVSLAGPDGRVVGGGLAGLLVAAGPVQVVVGSFLPGHQQEHKPKKQKIEYISTITPTHFSPISDQEIQVSFAGAKPIMTPAALQGHNIAFNNVQGSRDSSTDDRSPLPEKESNPSLSNAGVPC 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1485 339 MobiDBLite consensus disorder prediction 1 74 - -
Dere06g1485 339 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 31 317 IPR039605 GO:0003680
Dere06g1485 339 FunFam AT-hook motif nuclear-localized protein 1-like 136 266 - -
Dere06g1485 339 SUPERFAMILY AF0104/ALDC/Ptd012-like 133 257 - -
Dere06g1485 339 CDD DUF296 135 249 IPR005175 -
Dere06g1485 339 Gene3D - 136 269 - -
Dere06g1485 339 ProSiteProfiles PPC domain profile profile. 131 271 IPR005175 -
Dere06g1485 339 Pfam Plants and Prokaryotes Conserved (PCC) domain 136 249 IPR005175 -
Dere06g1485 339 MobiDBLite consensus disorder prediction 308 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1485 Dere-ChrDere06 27887618 27892492 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1485 45 287 AT-hook Motif Nuclear Localized (AHL) Family AT4G25320 60.714 2.20e-94 285
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere06g1485 06 27887618 27892492 Dere01g1157 01 23444217 23448491 CCT
Dere06g1485 06 27887618 27892492 Dere01g1157 01 23444217 23448491 ECH
Dere06g1485 06 27887618 27892492 Dere06g1485 06 27887618 27892492 ECH