LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere06g1485	ATGGAGGAAAAGGAGAGTTTTGGTTCTGGGCTTGCGGGGAAGGTTAACGAAGCCCCGGAGAGCTTCCACGTGGCTCCGAGAAATGAAAACTCCGGTAAGTTCGCCGGTGGGCCCGAAGCGGAGACTCCGGCGCCTGTAAGTGTGGCGGCGACGGCTACGTCAACTGCAGCTACAGAAGGTAAGAAGAAGAGAGGGAGGCCAAGGAAATATGGTCCCGATGGCACAATGGCGTTGGCGTTGTCTCCGATGCCGATTTCGTCATCAATTCCGTTGACAGGTGACTTCTCAGGTTGGAAACGGGGTAGAGGGCGGCCCATTGAATCTATCAAGAAGTCTTATAAATATGAATACGATAGTCCCGGACCGGGTAATGGAATCGCATACTCAGTTGGTGCCAATTTTACACCCCATGTGCTCACAGTTAATGCTGGCGAGGATGTTACTATGAAGGTTATGTCCTTCTCTCAACAAGGATCCCGTGCTATTTGCATTCTTTCTGCAAACGGAATGATTTCAAATGTAACACTTCGTCAACCAACTTCCTCTGGGGGTACTTTAACATATGAGGGACGATTTGAGATTCTTTCCTTGTCTGGTTCATTTATGCCAACTGAGAATGGATTAACGAAGAGCAGATCTGGTGGAATGAGTGTCTCTTTGGCAGGTCCAGATGGTCGAGTGGTTGGGGGTGGACTTGCTGGTCTGTTAGTTGCTGCAGGCCCTGTGCAGGTTGTCGTGGGCAGTTTCCTTCCAGGTCACCAGCAGGAGCACAAACCCAAGAAGCAGAAGATAGAGTATATATCTACTATCACCCCTACCCATTTTAGTCCCATCTCCGATCAAGAAATACAAGTCAGTTTTGCTGGAGCAAAGCCTATTATGACACCTGCTGCTCTTCAAGGACACAATATTGCTTTTAACAATGTTCAAGGCTCTAGGGACTCATCCACTGATGATAGATCTCCTTTGCCTGAAAAAGAGTCTAATCCCAGCCTATCAAATGCGGGGGTTCCATGCTAA	1020	0.4853	MEEKESFGSGLAGKVNEAPESFHVAPRNENSGKFAGGPEAETPAPVSVAATATSTAATEGKKKRGRPRKYGPDGTMALALSPMPISSSIPLTGDFSGWKRGRGRPIESIKKSYKYEYDSPGPGNGIAYSVGANFTPHVLTVNAGEDVTMKVMSFSQQGSRAICILSANGMISNVTLRQPTSSGGTLTYEGRFEILSLSGSFMPTENGLTKSRSGGMSVSLAGPDGRVVGGGLAGLLVAAGPVQVVVGSFLPGHQQEHKPKKQKIEYISTITPTHFSPISDQEIQVSFAGAKPIMTPAALQGHNIAFNNVQGSRDSSTDDRSPLPEKESNPSLSNAGVPC	339

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere06g1485	339	MobiDBLite	consensus disorder prediction	1	74	-	-
	Dere06g1485	339	PANTHER	AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9	31	317	IPR039605	GO:0003680
	Dere06g1485	339	FunFam	AT-hook motif nuclear-localized protein 1-like	136	266	-	-
	Dere06g1485	339	SUPERFAMILY	AF0104/ALDC/Ptd012-like	133	257	-	-
	Dere06g1485	339	CDD	DUF296	135	249	IPR005175	-
	Dere06g1485	339	Gene3D	-	136	269	-	-
	Dere06g1485	339	ProSiteProfiles	PPC domain profile profile.	131	271	IPR005175	-
	Dere06g1485	339	Pfam	Plants and Prokaryotes Conserved (PCC) domain	136	249	IPR005175	-
	Dere06g1485	339	MobiDBLite	consensus disorder prediction	308	339	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere06g1485	Dere-ChrDere06	27887618	27892492	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere06g1485	45	287	AT-hook Motif Nuclear Localized (AHL) Family	AT4G25320	60.714	2.20e-94	285

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dere06g1485	06	27887618	27892492	Dere01g1157	01	23444217	23448491	CCT
	Dere06g1485	06	27887618	27892492	Dere01g1157	01	23444217	23448491	ECH
	Dere06g1485	06	27887618	27892492	Dere06g1485	06	27887618	27892492	ECH

Showing 1 to 3 of 3 entries