Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1463 ATGCCTTCTGTATCTCTCTCTGAGAGCCCCAAGGAGAAGAAGGAGAAGAAGAAGAAGATGAAAAGCCAGGCTCTAACTCAAGAAGCTTCAGAGCCAGAAGCATCAATCGGCAAGAAGAGCAAGAAAAGTTCCAAGCTTTCAAAAAATGCGAAGGCGTCTACTTCTGACCAAGATGGGTTTTCGGACATGAAGGCGAAGAAGAAGGAGATTAAGAAGCGTAAGTATTCGGATATTGATGGGGATGGAGAGAAGAGCGAGACTCGCTCGGAGTTGGTTGAGCCTGAAACTTCGAGAGCGAAGAGTGAGGACAAGAGGGAGAATAATAAAAAGCCGAAATTCGAGGAACCTGGCATGGGAGAGGAAGAGGTCGAGAAGAAGGAGGATCCCAATGCAATTTCAAACTTTCGGATATCGGAGCCCTTGAGGGTGAAGTTGAAGGAGAAGGGGATTGAATCGCTATTTCCCATTCAGGCCATGACCTTTGATACCATTCTCGATGGTTCTGATTTGGTCGGTCGGGCTCGCACTGGTCAGGGTAAAACTTTGGCTTTTGTATTGCCCATATTAGAGTCTTTAATAAATGGTCCAGCAAAAGGATCAAGAAAGACTGGCTATGGGAGGTCTCCAAGTGTTCTCGTGCTCTTACCTACTAGGGAATTGGCTTCTCAGGTGTTTTCGGATTTCGAAGTATATGGAGGGGCATTGGGTTTGATTTCTTGCTGTTTATATGGTGGAGCTCCATATCAATCTCAAGAAATTAGGCTCAAGAGAGGTGTTGATATTGTTGTCGGAACACCAGGCCGCATAAAGGATCATATAGAGAGGGAAAATATTGACCTGACCCAACTAAGGTTCCGTGTCCTTGATGAGGCAGACGAGATGCTAAGGATGGGTTTTGTTGAAGATGTTGAACTCATTTTGGGTAAGGTTAAAGATGTTAGTAAAGTTCAGACACTTCTATTCAGTGCTACTTTACCAGACTGGGTTAAGCATATTTCTTCAAAGTTTCTGAAATCGGATAAGAAAACTGTTGATCTAGTTGGGAATGAGAAAATGAAGGCTAGCACCAATGTTAGGCATATTGTTCTTCCATGTATGAGTTCTGCCAGGCCCCAGCTTATCCCAGACATTATTCGCTGCTATAGTAGTGGTGGCCGGACAATTATATTTACTGAGACAAAGGAGTCTGCTTCTGAGCTTGCAGGGTTGTTGCCTGGAGCCCGACCCTTGCATGGTGACATACAACAAGGACAACGTGAGGTTACATTGTCTGGTTTTAGATCTGGAAAATTTTTGACATTAGTAGCCACAAATGTGGCAGCTCGGGGATTGGATATTAATGATGTTCAGTTAATTATTCAGTGTGAACCTCCACGTGATGTAGAAGCCTATATTCATCGTTCTGGCCGCACAGGACGAGCAGGTAATACTGGAGTTGCAGTTATGCTTTTTGATCCAAGAAGGTCAAATATATCTAAAATAGAAAAAGAATCGGGTGTGAAATTTGAGCATATATCAGCTCCTCAGCCTGCTGATATTGCAAAAGCTGTTGGTGGGGATGCTGCTGAAATGATAACCCAAGTGTCTGACAGTGTGATTCCTGCATTCAAGTCTGCTGCTGTGGAGCTTATGAAGAACTCTGGTTTGACAGCCGTTGAATTACTTGCAAAAGCTCTTGCCAAGGCTGTTGGTTATACTGAGATAAAAAAGAGATCACTTCTCACTTCCATGGAGAACCATGTTACGTTACTTCTTGAGATTGGAAGACCCATCTTCACCCCATCTTTTGCATATGGAATCCTGAGGAGATTCTTGCCTGAGGAGAAGGTTGAGGCAGTGAAGGGTCTTACTCTAACTGCAGATGGAAATGGTTCTGTTTTCGATGTACCAGCTGAAGATTTAGATACATATCTTGCTGGTCAGGAAAATGCTGCTAATGTAAGCTTAGAAGTATTAGAAGTATTGCCTCAATTGCAAGAAAGAGACCAACCGAAATGGGGCAGATTTGGTGGTGGTGGTGGTGGTCGTGGCGGGTTTGGTAATAGAAGTGGTGGCAGTGGAAACAGGTTTTCCGGTGGAAGAGGAGGTGGTAGGAATGGTGGATTTTCAAATCAGAGGAGTGATAGGTTTTCCAATGGTTCTAATGGTGGGAGAGGCCGTGGCAACAACAGGGGGGGAAAGAGATGGTGA 2190 0.4429 MPSVSLSESPKEKKEKKKKMKSQALTQEASEPEASIGKKSKKSSKLSKNAKASTSDQDGFSDMKAKKKEIKKRKYSDIDGDGEKSETRSELVEPETSRAKSEDKRENNKKPKFEEPGMGEEEVEKKEDPNAISNFRISEPLRVKLKEKGIESLFPIQAMTFDTILDGSDLVGRARTGQGKTLAFVLPILESLINGPAKGSRKTGYGRSPSVLVLLPTRELASQVFSDFEVYGGALGLISCCLYGGAPYQSQEIRLKRGVDIVVGTPGRIKDHIERENIDLTQLRFRVLDEADEMLRMGFVEDVELILGKVKDVSKVQTLLFSATLPDWVKHISSKFLKSDKKTVDLVGNEKMKASTNVRHIVLPCMSSARPQLIPDIIRCYSSGGRTIIFTETKESASELAGLLPGARPLHGDIQQGQREVTLSGFRSGKFLTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLFDPRRSNISKIEKESGVKFEHISAPQPADIAKAVGGDAAEMITQVSDSVIPAFKSAAVELMKNSGLTAVELLAKALAKAVGYTEIKKRSLLTSMENHVTLLLEIGRPIFTPSFAYGILRRFLPEEKVEAVKGLTLTADGNGSVFDVPAEDLDTYLAGQENAANVSLEVLEVLPQLQERDQPKWGRFGGGGGGRGGFGNRSGGSGNRFSGGRGGGRNGGFSNQRSDRFSNGSNGGRGRGNNRGGKRW 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1463 729 SUPERFAMILY RNA-binding domain, RBD 568 651 IPR035979 GO:0003676
Dere06g1463 729 CDD SF2_C_DEAD 358 484 - -
Dere06g1463 729 CDD GUCT_RH7_like 571 656 - -
Dere06g1463 729 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 372 514 IPR001650 -
Dere06g1463 729 MobiDBLite consensus disorder prediction 662 729 - -
Dere06g1463 729 FunFam DEAD-box ATP-dependent RNA helicase 7 581 653 - -
Dere06g1463 729 CDD DEADc 145 338 - -
Dere06g1463 729 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 103 544 - -
Dere06g1463 729 SMART helicmild6 398 475 IPR001650 -
Dere06g1463 729 Gene3D - 355 582 IPR027417 -
Dere06g1463 729 Pfam DEAD/DEAH box helicase 154 331 IPR011545 GO:0003676|GO:0005524
Dere06g1463 729 MobiDBLite consensus disorder prediction 60 127 - -
Dere06g1463 729 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 208 487 IPR027417 -
Dere06g1463 729 MobiDBLite consensus disorder prediction 698 719 - -
Dere06g1463 729 MobiDBLite consensus disorder prediction 1 127 - -
Dere06g1463 729 Gene3D - 73 345 IPR027417 -
Dere06g1463 729 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 287 295 IPR000629 -
Dere06g1463 729 Pfam Helicase conserved C-terminal domain 374 475 IPR001650 -
Dere06g1463 729 Gene3D - 583 653 - -
Dere06g1463 729 MobiDBLite consensus disorder prediction 8 24 - -
Dere06g1463 729 Pfam GUCT (NUC152) domain 564 659 IPR012562 GO:0003723|GO:0004386|GO:0005524
Dere06g1463 729 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 161 343 IPR014001 -
Dere06g1463 729 SMART ultradead3 149 361 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1463 Dere-ChrDere06 27548884 27554665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1463 167 481 Eukaryotic Initiation Factors Gene Family AT1G72730 31.661 6.67e-38 144