Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1451 ATGGGGAGGGCACCCTGTTGTGATAAAGATGGAGTGAGAAAAGGAGCTTGGACTCCTGAAGAAGACCAAATCTTAGTTCAGTACATCAGGGAGCATGGCTGTGGTAGTTGGCGGACACTCCCCAAGCACGCAGGTCTACTTCGATGTGGAAAAAGTTGTCGCCTTCGGTGGATAAATTATCTTCGTCCTGACATCAAGCGTGGCCCTTTTACTTCTGAAGAAGAAAGTACAATTATTCAACTTCATGGCATGCTCGGAAACAGGTGGGCTGCTATTGCATCTCATTTACCTGGAAGAACAGACAATGAAATTAAGAACTATTGGAACACCCATCTGAAGAAGCGTCTCCTTCGTTCAGGTCGTTTCCTTGAGGCACAAGAGCCCTCTTTTGGTCCTGATCAAAGTGATATAAAATCTGAATCTCCTTCTATACGTCACATAATACAGTGGGAAAAGGCCAGAGTTGAGGCTGAAACAAGGCTGTCAAAGGAATTGGAATCCTCAAGTCTTAATCCTTGTTCTAAAACTAATTCATATCCTGATTGCTTTCTTCAACTTTGGCATTCTGAGGTAGGACAATCATTTCGCATGATTGCAGAAAAGGAAGCAGGAAGTGAAAGCCCTGCCTCCCAAGCAAGCAGTGCCTTTGCCAACATGACTCAAGAGCAAGTAAGGAGCTGCAAACCAAAGCTTGGAGATGGTACAGCTGGGTCAGAGTCAGCTTCTTATGAATTTCTTGATGCCTCTGATTCTGCATTAAAGCTCCTGCTAGATATACCTGATGGTAGTATAGGATTCTTAGAAGCATTGGGACAGACTGAGAGTTTCCTGAGCCCTCTTCATGGTAGATGTGACTAA 858 0.4441 MGRAPCCDKDGVRKGAWTPEEDQILVQYIREHGCGSWRTLPKHAGLLRCGKSCRLRWINYLRPDIKRGPFTSEEESTIIQLHGMLGNRWAAIASHLPGRTDNEIKNYWNTHLKKRLLRSGRFLEAQEPSFGPDQSDIKSESPSIRHIIQWEKARVEAETRLSKELESSSLNPCSKTNSYPDCFLQLWHSEVGQSFRMIAEKEAGSESPASQASSAFANMTQEQVRSCKPKLGDGTAGSESASYEFLDASDSALKLLLDIPDGSIGFLEALGQTESFLSPLHGRCD 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1451 285 CDD SANT 69 112 IPR001005 -
Dere06g1451 285 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Dere06g1451 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Dere06g1451 285 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 205 - -
Dere06g1451 285 CDD SANT 16 61 IPR001005 -
Dere06g1451 285 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dere06g1451 285 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Dere06g1451 285 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dere06g1451 285 FunFam Myb transcription factor 11 67 - -
Dere06g1451 285 Gene3D - 14 66 - -
Dere06g1451 285 FunFam MYB transcription factor 69 116 - -
Dere06g1451 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Dere06g1451 285 SMART sant 66 114 IPR001005 -
Dere06g1451 285 SMART sant 13 63 IPR001005 -
Dere06g1451 285 Gene3D - 69 116 - -
Dere06g1451 285 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1451 Dere-ChrDere06 27403832 27407005 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1451 1 268 MYB Transcription Factor Family AT3G61250 53.929 6.25e-95 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere06g1451 Myb_DNA-binding 2.1e-16 CL0123