Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g1448 ATGGGGTGCCAGCCACTTGATAAGGCAAAACCAAAACACAGGAAGGGGTTATGGTCACCTGAAGAAGACAATAAGCTCAGAAACTTCATCCTCAAGCATGGCCATGGCTGCTGGAGCTCTGTTCCCGGTAAGGCAGGCTTGCAGAGGAATGGGAAGAGCTGCAGATTAAGATGGATCAACTATCTAAGGCCAGGATTAAAGAGAGGGATGTTCAGCAAACAAGAGGAGCAGACAATCTTGACCCTTCACAACATGCTAGGCAACAAGTGGTCTCAGATAGCACAGCACCTACCAGGAAGGACAGACAATGAGATAAAGAACCACTGGCATTCATATTTGAAAAAGAAAGTGGCCAAGGCAGAGGAAATTAAATCTCATAATAATATACAACTGCAGTATGCTAGCTCAAGCTCAGATACCTTTGATCCTGCTTCACCCTCAAACCAAAAACCAGCAATTCCAAACTCTGATCACTCCTCTTCTTCACAAAACTGTAACTTCATCACGGAGGCTTGTCAGAGCTCCTTACCAAAACTTCTATTTGCTGAGTGGCTTTCACTAGATCATGTCCACAGTGGGATCCCTGCAAATTCAGGTGATGACCCTTCAGTATTCAGAAATGGAAGTTTCGATCAGTACTCAGATTTCCATGAAGCTGTGATGCATGGTGTATCAGACGGAGGAAGCTATGGTGGAGAGTTTCATGATGGTCCAACAACCCCAAGTGCAGCAGCAGCTGCTGAAGTGTTCAATTCACAGCTCAAGATTGCAAATCAAATGGTAGGAAATGAGCTCATCCATTTCCCAAGTTTCAGCATGAGCAATGATCTAATGTACATATAA 843 0.4437 MGCQPLDKAKPKHRKGLWSPEEDNKLRNFILKHGHGCWSSVPGKAGLQRNGKSCRLRWINYLRPGLKRGMFSKQEEQTILTLHNMLGNKWSQIAQHLPGRTDNEIKNHWHSYLKKKVAKAEEIKSHNNIQLQYASSSSDTFDPASPSNQKPAIPNSDHSSSSQNCNFITEACQSSLPKLLFAEWLSLDHVHSGIPANSGDDPSVFRNGSFDQYSDFHEAVMHGVSDGGSYGGEFHDGPTTPSAAAAAEVFNSQLKIANQMVGNELIHFPSFSMSNDLMYI 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g1448 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Dere06g1448 280 CDD SANT 18 62 IPR001005 -
Dere06g1448 280 CDD SANT 71 113 IPR001005 -
Dere06g1448 280 MobiDBLite consensus disorder prediction 134 160 - -
Dere06g1448 280 PANTHER MYB DOMAIN PROTEIN 55 8 167 - -
Dere06g1448 280 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Dere06g1448 280 FunFam MYB transcription factor 12 68 - -
Dere06g1448 280 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Dere06g1448 280 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Dere06g1448 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Dere06g1448 280 Gene3D - 70 140 - -
Dere06g1448 280 FunFam MYB transcription factor 70 142 - -
Dere06g1448 280 SMART sant 14 64 IPR001005 -
Dere06g1448 280 SMART sant 67 115 IPR001005 -
Dere06g1448 280 Gene3D - 15 67 - -
Dere06g1448 280 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Dere06g1448 280 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g1448 Dere-ChrDere06 27380048 27382788 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g1448 7 191 MYB Transcription Factor Family AT5G52260 53.333 9.55e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere06g1448 Myb_DNA-binding 1.8e-12 CL0123